(76 nodes) TonB-dependent receptor, plug domain network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT05463.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
	AIT05147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (779 aa)
	AIT05154.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (831 aa)
	AIT07884.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (818 aa)
	AIT07885.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (748 aa)
	AIT05231.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (798 aa)
	AIT05233.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (964 aa)
	AIT05238.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (739 aa)
	AIT07903.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (813 aa)
	AIT07904.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
	AIT05269.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (852 aa)
	AIT05305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (755 aa)
	AIT07919.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (827 aa)
	AIT05360.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)
	AIT05376.1	Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (970 aa)
	AIT07926.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (938 aa)
	AIT07928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1035 aa)
	AIT05383.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AIT05409.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (933 aa)
	AIT05413.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (843 aa)
	AIT07935.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	AIT05456.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (966 aa)
	AIT07312.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1023 aa)
	AIT08262.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1000 aa)
	AIT08270.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (805 aa)
	AIT07453.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (827 aa)
	AIT07566.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (883 aa)
	AIT07607.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)
	AIT07618.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1070 aa)
	AIT07631.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1006 aa)
	AIT07693.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (999 aa)
	AIT07728.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (939 aa)
	AIT07729.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1078 aa)
	AIT07750.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)
	AIT08341.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (949 aa)
	AIT07771.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AIT08347.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
	AIT07825.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
	AIT08363.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)
	AIT05473.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (900 aa)
	AIT05476.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1031 aa)
	AIT05483.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	AIT05577.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
	AIT05589.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (911 aa)
	AIT05590.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (907 aa)
	AIT05710.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1027 aa)
	AIT05716.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (704 aa)
	AIT05747.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
	AIT05788.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1011 aa)
	AIT07992.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (818 aa)
	AIT05806.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (945 aa)
	AIT05914.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (804 aa)
	AIT08009.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (766 aa)
	AIT05934.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1026 aa)
	AIT05947.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1004 aa)
	AIT06041.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
	AIT08040.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)
	AIT08056.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)
	AIT06203.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1150 aa)
	AIT06211.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (784 aa)
	AIT06231.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
	AIT06353.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)
	AIT06394.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (947 aa)
	AIT06464.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1048 aa)
	AIT06469.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1291 aa)
	AIT06476.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)
	AIT06704.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1086 aa)
	AIT06707.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (679 aa)
	AIT06797.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (944 aa)
	AIT06936.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (841 aa)
	AIT07037.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1038 aa)
	AIT07083.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1010 aa)
	AIT07110.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
	AIT08233.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
	AIT07138.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
	AIT08240.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT05147.1	AIT05154.1	MC45_00360	MC45_00410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
AIT05147.1	AIT05233.1	MC45_00360	MC45_00950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AIT05147.1	AIT05383.1	MC45_00360	MC45_02040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AIT05147.1	AIT05456.1	MC45_00360	MC45_02500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AIT05147.1	AIT05473.1	MC45_00360	MC45_02615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AIT05147.1	AIT05476.1	MC45_00360	MC45_02635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AIT05147.1	AIT05483.1	MC45_00360	MC45_02680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
AIT05147.1	AIT05710.1	MC45_00360	MC45_04045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AIT05147.1	AIT05934.1	MC45_00360	MC45_05420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AIT05147.1	AIT05947.1	MC45_00360	MC45_05505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AIT05147.1	AIT06231.1	MC45_00360	MC45_07340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AIT05147.1	AIT06469.1	MC45_00360	MC45_08930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AIT05147.1	AIT06704.1	MC45_00360	MC45_10325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
AIT05147.1	AIT07083.1	MC45_00360	MC45_12645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AIT05147.1	AIT07110.1	MC45_00360	MC45_12845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AIT05147.1	AIT07728.1	MC45_00360	MC45_16685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AIT05147.1	AIT07729.1	MC45_00360	MC45_16705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
AIT05147.1	AIT07884.1	MC45_00360	MC45_00485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
AIT05147.1	AIT07903.1	MC45_00360	MC45_01200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AIT05147.1	AIT07919.1	MC45_00360	MC45_01695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570