(10 nodes) FAD-binding, type PCMH-like superfamily network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT05187.1	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AIT05239.1	FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AIT05278.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
	AIT06294.1	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	murB	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (295 aa)
	AIT06824.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AIT07042.1	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	AIT07288.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	AIT07755.1	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AIT08358.1	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT05187.1	AIT06824.1	MC45_00670	MC45_11075	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AIT05187.1	AIT07755.1	MC45_00670	MC45_16895	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AIT05278.1	AIT06294.1	MC45_01320	MC45_07765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AIT06294.1	AIT05278.1	MC45_07765	MC45_01320	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AIT06824.1	AIT05187.1	MC45_11075	MC45_00670	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AIT06824.1	AIT07755.1	MC45_11075	MC45_16895	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AIT07755.1	AIT05187.1	MC45_16895	MC45_00670	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AIT07755.1	AIT06824.1	MC45_16895	MC45_11075	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904