(39 nodes) TonB-dependent receptor-like network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT07453.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (827 aa)
	AIT05147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (779 aa)
	AIT07885.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (748 aa)
	AIT05231.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (798 aa)
	AIT05238.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (739 aa)
	AIT07904.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
	AIT05269.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (852 aa)
	AIT05305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (755 aa)
	AIT05360.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)
	AIT07928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1035 aa)
	AIT07932.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)
	AIT05413.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (843 aa)
	AIT07935.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	AIT05463.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
	AIT05577.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
	AIT05589.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (911 aa)
	AIT05590.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (907 aa)
	AIT05716.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (704 aa)
	AIT05747.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
	AIT05788.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1011 aa)
	AIT05914.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (804 aa)
	AIT08009.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (766 aa)
	AIT08040.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)
	AIT08056.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)
	AIT06211.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (784 aa)
	AIT06353.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)
	AIT06476.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)
	AIT06707.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (679 aa)
	AIT06797.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (944 aa)
	AIT06936.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (841 aa)
	AIT07110.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
	AIT08233.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
	AIT08240.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	AIT07607.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)
	AIT07750.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)
	AIT07771.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AIT08347.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
	AIT07825.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
	AIT08363.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT05147.1	AIT07110.1	MC45_00360	MC45_12845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AIT05231.1	AIT05716.1	MC45_00940	MC45_04080	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
AIT05231.1	AIT06476.1	MC45_00940	MC45_08975	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AIT05231.1	AIT07110.1	MC45_00940	MC45_12845	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
AIT05231.1	AIT07904.1	MC45_00940	MC45_01210	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AIT05231.1	AIT08347.1	MC45_00940	MC45_17060	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AIT05238.1	AIT05463.1	MC45_00980	MC45_02535	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AIT05238.1	AIT05716.1	MC45_00980	MC45_04080	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
AIT05238.1	AIT07110.1	MC45_00980	MC45_12845	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AIT05269.1	AIT05577.1	MC45_01230	MC45_03230	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
AIT05269.1	AIT05914.1	MC45_01230	MC45_05265	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AIT05269.1	AIT06353.1	MC45_01230	MC45_08130	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
AIT05269.1	AIT07453.1	MC45_01230	MC45_14945	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AIT05269.1	AIT07750.1	MC45_01230	MC45_16855	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AIT05269.1	AIT07771.1	MC45_01230	MC45_17015	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AIT05269.1	AIT07885.1	MC45_01230	MC45_00490	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AIT05269.1	AIT07928.1	MC45_01230	MC45_02030	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
AIT05269.1	AIT07932.1	MC45_01230	MC45_02145	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AIT05269.1	AIT08240.1	MC45_01230	MC45_13070	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AIT05305.1	AIT05716.1	MC45_01500	MC45_04080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439