(11 nodes) Other glycan degradation network (Sphingomonas taxi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIT07966.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (822 aa)
	AIT08035.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (969 aa)
	AIT06042.1	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (776 aa)
	AIT06043.1	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (856 aa)
	AIT06046.1	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (638 aa)
	AIT06689.1	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AIT07134.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1075 aa)
	AIT07569.1	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	AIT08332.1	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)
	AIT07730.1	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)
	AIT07760.1	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)

Your Current Organism:

Sphingomonas taxi

NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIT06042.1	AIT06043.1	MC45_06120	MC45_06125	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AIT06042.1	AIT06046.1	MC45_06120	MC45_06145	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AIT06042.1	AIT07134.1	MC45_06120	MC45_13000	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AIT06042.1	AIT07730.1	MC45_06120	MC45_16715	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AIT06042.1	AIT08035.1	MC45_06120	MC45_06090	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.430
AIT06042.1	AIT08332.1	MC45_06120	MC45_16710	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AIT06043.1	AIT06042.1	MC45_06125	MC45_06120	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AIT06043.1	AIT06046.1	MC45_06125	MC45_06145	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AIT06043.1	AIT07730.1	MC45_06125	MC45_16715	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AIT06043.1	AIT07760.1	MC45_06125	MC45_16930	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AIT06046.1	AIT06042.1	MC45_06145	MC45_06120	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AIT06046.1	AIT06043.1	MC45_06145	MC45_06125	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AIT06046.1	AIT07134.1	MC45_06145	MC45_13000	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AIT06046.1	AIT07569.1	MC45_06145	MC45_15660	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AIT06046.1	AIT07730.1	MC45_06145	MC45_16715	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AIT06046.1	AIT07760.1	MC45_06145	MC45_16930	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AIT06046.1	AIT07966.1	MC45_06145	MC45_03565	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.462
AIT06046.1	AIT08035.1	MC45_06145	MC45_06090	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.564
AIT06046.1	AIT08332.1	MC45_06145	MC45_16710	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AIT07134.1	AIT06042.1	MC45_13000	MC45_06120	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406