14 items (Thermofilum uzonense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKG38288.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AKG38289.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AKG38290.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AKG38291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	AKG38292.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	AKG38293.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	AKG38294.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AKG38455.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AKG38456.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AKG38457.1	GDP-mannose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AKG38507.1	Uridine phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AKG38508.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AKG38509.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AKG38510.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)

Your Current Organism:

Thermofilum uzonense

NCBI taxonomy Id: 1550241
Other names: DSM 28062, JCM 19810, T. uzonense, Thermofilum uzonense Toshchakov et al. 2016

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKG38288.1	AKG38289.1	MA03_01950	MA03_01955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AKG38288.1	AKG38290.1	MA03_01950	MA03_01960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AKG38288.1	AKG38291.1	MA03_01950	MA03_01965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AKG38288.1	AKG38292.1	MA03_01950	MA03_01970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
AKG38288.1	AKG38293.1	MA03_01950	MA03_01975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AKG38288.1	AKG38294.1	MA03_01950	MA03_01980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AKG38288.1	AKG38508.1	MA03_01950	MA03_03335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
AKG38288.1	AKG38509.1	MA03_01950	MA03_03340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AKG38289.1	AKG38288.1	MA03_01955	MA03_01950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AKG38289.1	AKG38290.1	MA03_01955	MA03_01960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AKG38289.1	AKG38291.1	MA03_01955	MA03_01965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
AKG38289.1	AKG38292.1	MA03_01955	MA03_01970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AKG38289.1	AKG38293.1	MA03_01955	MA03_01975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AKG38289.1	AKG38294.1	MA03_01955	MA03_01980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AKG38289.1	AKG38508.1	MA03_01955	MA03_03335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
AKG38289.1	AKG38509.1	MA03_01955	MA03_03340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AKG38290.1	AKG38288.1	MA03_01960	MA03_01950	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AKG38290.1	AKG38289.1	MA03_01960	MA03_01955	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AKG38290.1	AKG38291.1	MA03_01960	MA03_01965	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
AKG38290.1	AKG38292.1	MA03_01960	MA03_01970	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501