(21 nodes) Glycerophospholipid metabolism, and Glycerol metabolic process network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC38625.1	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	APC42515.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)
	APC38813.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)
	APC38817.1	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	APC38836.1	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (348 aa)
	APC39462.1	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	glpK	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. (496 aa)
	APC40123.1	HAD family hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family. (276 aa)
	APC40124.1	Glycerol-1-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	APC40125.1	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (348 aa)
	APC40468.1	Aquaporin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MIP/aquaporin (TC 1.A.8) family. (235 aa)
	glpK-2	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. (496 aa)
	APC40470.1	NAD(FAD)-dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	APC40471.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	APC40472.1	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	APC42663.1	Antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	APC40569.1	Glycerol-1-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	APC40923.1	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family. (268 aa)
	APC41300.1	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	APC41872.1	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. (244 aa)
	APC42046.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (83 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC38625.1	APC38813.1	A7L45_00085	A7L45_01390	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.812
APC38625.1	APC40470.1	A7L45_00085	A7L45_10530	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(FAD)-dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
APC38625.1	APC40471.1	A7L45_00085	A7L45_10535	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
APC38625.1	APC42515.1	A7L45_00085	A7L45_00090	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APC38625.1	APC42663.1	A7L45_00085	A7L45_10545	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
APC38813.1	APC38625.1	A7L45_01390	A7L45_00085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
APC38813.1	APC39462.1	A7L45_01390	A7L45_04975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
APC38813.1	APC40470.1	A7L45_01390	A7L45_10530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NAD(FAD)-dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
APC38813.1	APC40472.1	A7L45_01390	A7L45_10540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
APC38813.1	APC42515.1	A7L45_01390	A7L45_00090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
APC38813.1	APC42663.1	A7L45_01390	A7L45_10545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
APC38817.1	APC38836.1	A7L45_01410	A7L45_01520	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.824
APC38817.1	APC39462.1	A7L45_01410	A7L45_04975	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
APC38817.1	APC40124.1	A7L45_01410	A7L45_08600	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-1-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
APC38817.1	APC40125.1	A7L45_01410	A7L45_08605	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.824
APC38817.1	APC40472.1	A7L45_01410	A7L45_10540	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
APC38817.1	APC40569.1	A7L45_01410	A7L45_11055	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-1-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
APC38817.1	APC40923.1	A7L45_01410	A7L45_13005	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family.	0.935
APC38817.1	APC41300.1	A7L45_01410	A7L45_15045	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APC38817.1	APC41872.1	A7L45_01410	A7L45_18265	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	0.900