(5 nodes) Lactose metabolism, and Hexose transmembrane transport network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC38642.1	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily. (309 aa)
	APC38644.1	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	APC39518.1	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily. (309 aa)
	APC39899.1	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (622 aa)
	APC39900.1	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily. (304 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC38642.1	APC38644.1	A7L45_00215	A7L45_00225	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC38642.1	APC39518.1	A7L45_00215	A7L45_05275	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.903
APC38642.1	APC39899.1	A7L45_00215	A7L45_07350	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC38642.1	APC39900.1	A7L45_00215	A7L45_07355	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.916
APC38644.1	APC38642.1	A7L45_00225	A7L45_00215	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.999
APC38644.1	APC39518.1	A7L45_00225	A7L45_05275	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.998
APC38644.1	APC39899.1	A7L45_00225	A7L45_07350	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
APC38644.1	APC39900.1	A7L45_00225	A7L45_07355	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.998
APC39518.1	APC38642.1	A7L45_05275	A7L45_00215	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.903
APC39518.1	APC38644.1	A7L45_05275	A7L45_00225	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APC39518.1	APC39899.1	A7L45_05275	A7L45_07350	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC39518.1	APC39900.1	A7L45_05275	A7L45_07355	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.916
APC39899.1	APC38642.1	A7L45_07350	A7L45_00215	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.999
APC39899.1	APC38644.1	A7L45_07350	A7L45_00225	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
APC39899.1	APC39518.1	A7L45_07350	A7L45_05275	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.999
APC39899.1	APC39900.1	A7L45_07350	A7L45_07355	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.999
APC39900.1	APC38642.1	A7L45_07355	A7L45_00215	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.916
APC39900.1	APC38644.1	A7L45_07355	A7L45_00225	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APC39900.1	APC39518.1	A7L45_07355	A7L45_05275	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.916
APC39900.1	APC39899.1	A7L45_07355	A7L45_07350	1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999