(24 nodes) Mixed, incl. Ascorbate and aldarate metabolism, and Rhamnose metabolism network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC39417.1	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose. (104 aa)
	APC39418.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	APC39419.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	APC39420.1	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	rhaA	L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family. (418 aa)
	rhaD	Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. (272 aa)
	APC39442.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (463 aa)
	APC39443.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	araB	Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	APC39445.1	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	araA	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (488 aa)
	APC40205.1	L-ascorbate 6-phosphate lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	APC40206.1	PTS ascorbate transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	APC42644.1	PTS ascorbate transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	APC42645.1	PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	APC40207.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	APC40208.1	L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	APC40209.1	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	APC42646.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	APC40210.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (286 aa)
	APC40738.1	DUF4867 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	APC40739.1	Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	APC42741.1	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	xylB	Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC39417.1	APC39418.1	A7L45_04750	A7L45_04755	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
APC39417.1	APC39419.1	A7L45_04750	A7L45_04760	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
APC39417.1	APC39420.1	A7L45_04750	A7L45_04765	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
APC39417.1	rhaA	A7L45_04750	A7L45_04770	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family.	0.986
APC39417.1	rhaD	A7L45_04750	A7L45_04855	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.	0.810
APC39417.1	xylB	A7L45_04750	A7L45_16610	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
APC39418.1	APC39417.1	A7L45_04755	A7L45_04750	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	0.950
APC39418.1	APC39419.1	A7L45_04755	A7L45_04760	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
APC39418.1	APC39420.1	A7L45_04755	A7L45_04765	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
APC39418.1	rhaA	A7L45_04755	A7L45_04770	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family.	0.799
APC39418.1	rhaD	A7L45_04755	A7L45_04855	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.	0.708
APC39419.1	APC39417.1	A7L45_04760	A7L45_04750	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	0.692
APC39419.1	APC39418.1	A7L45_04760	A7L45_04755	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
APC39419.1	APC39420.1	A7L45_04760	A7L45_04765	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
APC39419.1	rhaA	A7L45_04760	A7L45_04770	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family.	0.756
APC39419.1	rhaD	A7L45_04760	A7L45_04855	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.	0.615
APC39420.1	APC39417.1	A7L45_04765	A7L45_04750	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	0.952
APC39420.1	APC39418.1	A7L45_04765	A7L45_04755	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
APC39420.1	APC39419.1	A7L45_04765	A7L45_04760	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
APC39420.1	APC39445.1	A7L45_04765	A7L45_04890	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446