(11 nodes) Mixed, incl. D-Arginine and D-ornithine metabolism, and Protein MutL network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC39794.1	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	APC41451.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (210 aa)
	APC41573.1	Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	APC41574.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (553 aa)
	APC41576.1	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	APC41577.1	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	APC41578.1	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	APC41579.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (736 aa)
	APC41580.1	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	APC41581.1	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	APC41582.1	2-amino-4-ketopentanoate thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC39794.1	APC41576.1	A7L45_06785	A7L45_16560	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
APC39794.1	APC41577.1	A7L45_06785	A7L45_16565	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APC39794.1	APC41578.1	A7L45_06785	A7L45_16570	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
APC39794.1	APC41579.1	A7L45_06785	A7L45_16575	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
APC39794.1	APC41580.1	A7L45_06785	A7L45_16580	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
APC39794.1	APC41581.1	A7L45_06785	A7L45_16585	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
APC39794.1	APC41582.1	A7L45_06785	A7L45_16590	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-amino-4-ketopentanoate thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APC41573.1	APC41574.1	A7L45_16545	A7L45_16550	Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.593
APC41574.1	APC41573.1	A7L45_16550	A7L45_16545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
APC41574.1	APC41576.1	A7L45_16550	A7L45_16560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
APC41574.1	APC41577.1	A7L45_16550	A7L45_16565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
APC41574.1	APC41578.1	A7L45_16550	A7L45_16570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
APC41574.1	APC41579.1	A7L45_16550	A7L45_16575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
APC41574.1	APC41580.1	A7L45_16550	A7L45_16580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APC41574.1	APC41581.1	A7L45_16550	A7L45_16585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
APC41574.1	APC41582.1	A7L45_16550	A7L45_16590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2-amino-4-ketopentanoate thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
APC41576.1	APC39794.1	A7L45_16560	A7L45_06785	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
APC41576.1	APC41574.1	A7L45_16560	A7L45_16550	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.624
APC41576.1	APC41577.1	A7L45_16560	A7L45_16565	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
APC41576.1	APC41578.1	A7L45_16560	A7L45_16570	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920