(6 nodes) D-Arginine and D-ornithine metabolism, and Protein MutL network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC41576.1	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	APC41577.1	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	APC41578.1	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	APC41579.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (736 aa)
	APC41580.1	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	APC41581.1	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC41576.1	APC41577.1	A7L45_16560	A7L45_16565	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
APC41576.1	APC41578.1	A7L45_16560	A7L45_16570	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APC41576.1	APC41579.1	A7L45_16560	A7L45_16575	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APC41576.1	APC41580.1	A7L45_16560	A7L45_16580	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APC41576.1	APC41581.1	A7L45_16560	A7L45_16585	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
APC41577.1	APC41576.1	A7L45_16565	A7L45_16560	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
APC41577.1	APC41578.1	A7L45_16565	A7L45_16570	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
APC41577.1	APC41579.1	A7L45_16565	A7L45_16575	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APC41577.1	APC41580.1	A7L45_16565	A7L45_16580	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APC41577.1	APC41581.1	A7L45_16565	A7L45_16585	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
APC41578.1	APC41576.1	A7L45_16570	A7L45_16560	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APC41578.1	APC41577.1	A7L45_16570	A7L45_16565	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
APC41578.1	APC41579.1	A7L45_16570	A7L45_16575	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
APC41578.1	APC41580.1	A7L45_16570	A7L45_16580	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
APC41578.1	APC41581.1	A7L45_16570	A7L45_16585	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
APC41579.1	APC41576.1	A7L45_16575	A7L45_16560	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APC41579.1	APC41577.1	A7L45_16575	A7L45_16565	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APC41579.1	APC41578.1	A7L45_16575	A7L45_16570	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
APC41579.1	APC41580.1	A7L45_16575	A7L45_16580	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC41579.1	APC41581.1	A7L45_16575	A7L45_16585	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	PLP-dependent lyase/thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962