(17 nodes) Oxidoreductase activity, acting on NAD(P)H network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC39783.1	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	APC40063.1	Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	APC40369.1	NADH-dependent flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	APC40598.1	MBL fold hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	APC39686.1	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	APC39622.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (757 aa)
	azoR	FMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (211 aa)
	APC39181.1	FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	A7L45_02230	acyl-CoA dehydrogenase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	APC38952.1	Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	APC41414.1	MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	APC42603.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)
	APC38830.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	APC38829.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (485 aa)
	APC38826.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
	APC38831.1	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	APC40062.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC38826.1	APC38829.1	A7L45_01460	A7L45_01475	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.861
APC38826.1	APC38830.1	A7L45_01460	A7L45_01480	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC38826.1	APC38831.1	A7L45_01460	A7L45_01485	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APC38826.1	APC42603.1	A7L45_01460	A7L45_06460	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
APC38829.1	APC38826.1	A7L45_01475	A7L45_01460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
APC38829.1	APC38830.1	A7L45_01475	A7L45_01480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC38829.1	APC38831.1	A7L45_01475	A7L45_01485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
APC38829.1	APC42603.1	A7L45_01475	A7L45_06460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
APC38830.1	APC38826.1	A7L45_01480	A7L45_01460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC38830.1	APC38829.1	A7L45_01480	A7L45_01475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APC38830.1	APC38831.1	A7L45_01480	A7L45_01485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC38830.1	APC39622.1	A7L45_01480	A7L45_05840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
APC38830.1	APC42603.1	A7L45_01480	A7L45_06460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
APC38831.1	APC38826.1	A7L45_01485	A7L45_01460	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APC38831.1	APC38829.1	A7L45_01485	A7L45_01475	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.997
APC38831.1	APC38830.1	A7L45_01485	A7L45_01480	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC38831.1	APC39622.1	A7L45_01485	A7L45_05840	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
APC38831.1	APC42603.1	A7L45_01485	A7L45_06460	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
APC39622.1	APC38830.1	A7L45_05840	A7L45_01480	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
APC39622.1	APC38831.1	A7L45_05840	A7L45_01485	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638