STRINGSTRING
rbsK rbsK gpmI gpmI APC42150.1 APC42150.1 APC42246.1 APC42246.1 APC42475.1 APC42475.1 glpK glpK APC39710.1 APC39710.1 APC39629.1 APC39629.1 APC42594.1 APC42594.1 APC39589.1 APC39589.1 APC39587.1 APC39587.1 pduE pduE pduD pduD APC39582.1 APC39582.1 APC39573.1 APC39573.1 APC39554.1 APC39554.1 APC39519.1 APC39519.1 APC39502.1 APC39502.1 araA araA APC39445.1 APC39445.1 araB araB rhaD rhaD rhaA rhaA APC39420.1 APC39420.1 APC39393.1 APC39393.1 APC39335.1 APC39335.1 APC39333.1 APC39333.1 APC39332.1 APC39332.1 APC39331.1 APC39331.1 APC39330.1 APC39330.1 APC39329.1 APC39329.1 APC39325.1 APC39325.1 APC39884.1 APC39884.1 APC41283.1 APC41283.1 APC41356.1 APC41356.1 APC41366.1 APC41366.1 APC42726.1 APC42726.1 APC41389.1 APC41389.1 APC41390.1 APC41390.1 arcA arcA pdxT pdxT APC41607.1 APC41607.1 APC41647.1 APC41647.1 APC41648.1 APC41648.1 APC41660.1 APC41660.1 APC41661.1 APC41661.1 nagB nagB murQ murQ glmS glmS glmE glmE APC40016.1 APC40016.1 hutH hutH hutU hutU hutI hutI APC40027.1 APC40027.1 hutG hutG APC40030.1 APC40030.1 APC40036.1 APC40036.1 APC40181.1 APC40181.1 APC40205.1 APC40205.1 APC40209.1 APC40209.1 iolC iolC APC40215.1 APC40215.1 APC38988.1 APC38988.1 APC39042.1 APC39042.1 APC39120.1 APC39120.1 APC39124.1 APC39124.1 iolD iolD APC42648.1 APC42648.1 iolE iolE APC40224.1 APC40224.1 APC40404.1 APC40404.1 APC40436.1 APC40436.1 APC40439.1 APC40439.1 glpK-2 glpK-2 rbsD rbsD APC40536.1 APC40536.1 APC40632.1 APC40632.1 dtd dtd APC40745.1 APC40745.1 APC40775.1 APC40775.1 APC40806.1 APC40806.1 APC40893.1 APC40893.1 APC40967.1 APC40967.1 APC40976.1 APC40976.1 A7L45_13780 A7L45_13780 APC41097.1 APC41097.1 APC41105.1 APC41105.1 APC39143.1 APC39143.1 APC39144.1 APC39144.1 APC39156.1 APC39156.1 APC39213.1 APC39213.1 tnaA tnaA APC39320.1 APC39320.1 APC38671.1 APC38671.1 APC38706.1 APC38706.1 APC38827.1 APC38827.1 APC38828.1 APC38828.1 APC38848.1 APC38848.1 APC38912.1 APC38912.1 uxuA uxuA APC38974.1 APC38974.1 APC38976.1 APC38976.1 APC38978.1 APC38978.1 uxaC uxaC APC39775.1 APC39775.1 APC39777.1 APC39777.1 APC39789.1 APC39789.1 APC39808.1 APC39808.1 uxuA-2 uxuA-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rbsKRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (306 aa)
gpmIPhosphoglycerate mutase (2,3-diphosphoglycerate-independent); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (509 aa)
APC42150.1Dipeptide epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
APC42246.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (345 aa)
APC42475.1Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
glpKGlycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. (496 aa)
APC39710.1Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
APC39629.1CoF synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
APC42594.1Ethanolamine utilization protein EutJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
APC39589.1Phosphate propanoyltransferase; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (217 aa)
APC39587.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
pduEPropanediol dehydratase; With pduCD catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
pduDPropanediol dehydratase; With PduCE catalyzes the formation of propionaldehyde from 1,2-propanediol; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
APC39582.1Microcompartment protein PduB; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
APC39573.12-hydroxyglutaryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
APC39554.1Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
APC39519.1L-sorbose 1-phosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
APC39502.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (488 aa)
APC39445.1L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
araBRibulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
rhaDRhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. (272 aa)
rhaAL-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family. (418 aa)
APC39420.1Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
APC39393.1DUF4931 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
APC39335.1D-lysine 5,6-aminomutase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
APC39333.1Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
APC39332.1L-erythro-3,5-diaminohexanoate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
APC39331.1succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
APC39330.1Branched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
APC39329.13-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
APC39325.1Butanediol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
APC39884.12-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
APC41283.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
APC41356.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
APC41366.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
APC42726.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
APC41389.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (273 aa)
APC41390.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
arcAArginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
pdxTGlutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. (188 aa)
APC41607.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
APC41647.1Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
APC41648.1Diaminopropionate ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
APC41660.1Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (704 aa)
APC41661.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
nagBGlucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion. (241 aa)
murQN-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (301 aa)
glmSMethylaspartate mutase subunit S; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate). (143 aa)
glmEMethylaspartate mutase subunit E; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate). (485 aa)
APC40016.1Methylaspartate ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
hutHHistidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (675 aa)
hutIImidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
APC40027.1Glutamate formiminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
hutGFormimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. (340 aa)
APC40030.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
APC40036.1Dipeptide epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
APC40181.1Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (132 aa)
APC40205.1L-ascorbate 6-phosphate lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
APC40209.1L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
iolC5-dehydro-2-deoxygluconokinase; Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5-dehydro-2- deoxy-D-gluconate (DKGP). (338 aa)
APC40215.15-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
APC38988.1Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
APC39042.12-hydroxyglutaryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
APC39120.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
APC39124.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0597 family. (425 aa)
iolD3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG). (644 aa)
APC42648.1Inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
iolEMyo-inosose-2 dehydratase; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol). (298 aa)
APC40224.13-oxoacid CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 3-oxoacid CoA-transferase family. (526 aa)
APC40404.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
APC40436.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
APC40439.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
glpK-2Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. (496 aa)
rbsDD-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (131 aa)
APC40536.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0597 family. (421 aa)
APC40632.1Purine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (148 aa)
APC40745.14-hydroxybutyryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
APC40775.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
APC40806.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
APC40893.1FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
APC40967.1Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (216 aa)
APC40976.1Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (396 aa)
A7L45_13780Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
APC41097.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
APC41105.15'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (230 aa)
APC39143.1Branched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
APC39144.1succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
APC39156.1Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
APC39213.13-methylitaconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
tnaATyrosine phenol-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the beta-eliminating lyase family. (461 aa)
APC39320.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (372 aa)
APC38671.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M20A family. (375 aa)
APC38706.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
APC38827.1Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
APC38828.1Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
APC38848.1Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
APC38912.1Zn-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (355 aa)
APC38974.1Acyl CoA:acetate/3-ketoacid CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 3-oxoacid CoA-transferase family. (519 aa)
APC38976.1Acyl CoA:acetate/3-ketoacid CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 3-oxoacid CoA-transferase family. (517 aa)
APC38978.1Acyl CoA:acetate/3-ketoacid CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 3-oxoacid CoA-transferase family. (516 aa)
uxaCGlucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
APC39775.12-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
APC39777.1Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
APC39789.1Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (472 aa)
APC39808.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M20A family. (388 aa)
uxuA-2Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (355 aa)
Your Current Organism:
Clostridium estertheticum
NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum
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