(24 nodes) Monosaccharide catabolic process network (Clostridium estertheticum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC39393.1	DUF4931 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	APC39420.1	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	rhaA	L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family. (418 aa)
	APC41356.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	rhaD	Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. (272 aa)
	araB	Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	APC40806.1	MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	APC39445.1	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	APC38706.1	MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	APC38827.1	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	APC38828.1	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	APC41366.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	APC41390.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	rbsD	D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (131 aa)
	gpmI	Phosphoglycerate mutase (2,3-diphosphoglycerate-independent); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (509 aa)
	araA	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (488 aa)
	APC41097.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	rbsK	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (306 aa)
	APC40967.1	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (216 aa)
	APC39777.1	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	APC40205.1	L-ascorbate 6-phosphate lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	APC40209.1	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	APC39502.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	APC39156.1	Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC38827.1	APC38828.1	A7L45_01465	A7L45_01470	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
APC38828.1	APC38827.1	A7L45_01470	A7L45_01465	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
APC39156.1	APC39777.1	A7L45_03285	A7L45_06695	Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
APC39156.1	APC40967.1	A7L45_03285	A7L45_13240	Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.933
APC39156.1	araB	A7L45_03285	A7L45_04885	Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
APC39156.1	rbsK	A7L45_03285	A7L45_18515	Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.913
APC39420.1	APC39445.1	A7L45_04765	A7L45_04890	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
APC39420.1	APC40209.1	A7L45_04765	A7L45_09085	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
APC39420.1	APC40967.1	A7L45_04765	A7L45_13240	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.487
APC39420.1	araB	A7L45_04765	A7L45_04885	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
APC39420.1	rhaA	A7L45_04765	A7L45_04770	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family.	0.998
APC39420.1	rhaD	A7L45_04765	A7L45_04855	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.	0.992
APC39445.1	APC39420.1	A7L45_04890	A7L45_04765	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
APC39445.1	APC40205.1	A7L45_04890	A7L45_09055	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-ascorbate 6-phosphate lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
APC39445.1	APC40209.1	A7L45_04890	A7L45_09085	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
APC39445.1	APC40967.1	A7L45_04890	A7L45_13240	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.936
APC39445.1	araA	A7L45_04890	A7L45_04895	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.995
APC39445.1	araB	A7L45_04890	A7L45_04885	L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APC39777.1	APC39156.1	A7L45_06695	A7L45_03285	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
APC39777.1	APC40967.1	A7L45_06695	A7L45_13240	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.803