(17 nodes) Regulation of catalytic activity network (Clostridium estertheticum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC40266.1	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	APC40105.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (437 aa)
	APC40088.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	APC39697.1	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	APC39696.1	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	APC39512.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	APC42300.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	ychF	Redox-regulated ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (365 aa)
	APC42742.1	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
	APC41680.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (88 aa)
	APC41691.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	APC41834.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	APC42780.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	APC40946.1	DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. (115 aa)
	APC40933.1	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	APC40403.1	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family. (120 aa)
	APC40401.1	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family. (120 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC39512.1	APC40105.1	A7L45_05245	A7L45_08495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.607
APC39512.1	APC41691.1	A7L45_05245	A7L45_17260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
APC39696.1	APC39697.1	A7L45_06250	A7L45_06255	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
APC39696.1	APC40401.1	A7L45_06250	A7L45_10155	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.701
APC39696.1	APC40403.1	A7L45_06250	A7L45_10165	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.697
APC39697.1	APC39696.1	A7L45_06255	A7L45_06250	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
APC39697.1	APC40401.1	A7L45_06255	A7L45_10155	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.774
APC39697.1	APC40403.1	A7L45_06255	A7L45_10165	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.774
APC40105.1	APC39512.1	A7L45_08495	A7L45_05245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
APC40105.1	APC41691.1	A7L45_08495	A7L45_17260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
APC40266.1	APC41680.1	A7L45_09410	A7L45_17195	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.900
APC40266.1	APC42742.1	A7L45_09410	A7L45_16700	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
APC40401.1	APC39696.1	A7L45_10155	A7L45_06250	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
APC40401.1	APC39697.1	A7L45_10155	A7L45_06255	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APC40401.1	APC40403.1	A7L45_10155	A7L45_10165	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.934
APC40403.1	APC39696.1	A7L45_10165	A7L45_06250	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
APC40403.1	APC39697.1	A7L45_10165	A7L45_06255	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APC40403.1	APC40401.1	A7L45_10165	A7L45_10155	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.934
APC41680.1	APC40266.1	A7L45_17195	A7L45_09410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
APC41680.1	APC42742.1	A7L45_17195	A7L45_16700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900