(45 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC39682.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (485 aa)
	APC38688.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (450 aa)
	APC38721.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	APC38904.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (313 aa)
	APC38929.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	APC38941.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	APC39024.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	APC42542.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	APC39085.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	APC39095.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	APC39101.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	APC42552.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (695 aa)
	APC39126.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	APC42555.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	APC42557.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	APC39184.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	APC39238.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	APC39669.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	APC39822.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	APC39844.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	APC39847.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	APC39852.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (486 aa)
	APC39866.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	APC39936.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (457 aa)
	APC39944.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	APC42624.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	APC42628.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	APC40088.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	APC40109.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	APC40151.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	APC40165.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	APC40279.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (315 aa)
	APC40502.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	APC40533.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	APC40601.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	APC40649.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (567 aa)
	APC42687.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	APC41509.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	APC41700.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	APC41879.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (688 aa)
	APC42137.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (482 aa)
	APC42203.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (652 aa)
	APC42804.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	APC42425.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (487 aa)
	APC42448.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC38688.1	APC38721.1	A7L45_00685	A7L45_00855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
APC38688.1	APC38904.1	A7L45_00685	A7L45_01880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.560
APC38688.1	APC38929.1	A7L45_00685	A7L45_02020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
APC38688.1	APC38941.1	A7L45_00685	A7L45_02095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
APC38688.1	APC39024.1	A7L45_00685	A7L45_02545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
APC38688.1	APC39085.1	A7L45_00685	A7L45_02885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
APC38688.1	APC39095.1	A7L45_00685	A7L45_02935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
APC38688.1	APC39101.1	A7L45_00685	A7L45_02970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
APC38688.1	APC39126.1	A7L45_00685	A7L45_03115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
APC38688.1	APC39184.1	A7L45_00685	A7L45_03465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
APC38688.1	APC39238.1	A7L45_00685	A7L45_03750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
APC38688.1	APC39669.1	A7L45_00685	A7L45_06105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
APC38688.1	APC39682.1	A7L45_00685	A7L45_06180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.671
APC38688.1	APC39822.1	A7L45_00685	A7L45_06940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
APC38688.1	APC39844.1	A7L45_00685	A7L45_07055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
APC38688.1	APC39847.1	A7L45_00685	A7L45_07075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
APC38688.1	APC39852.1	A7L45_00685	A7L45_07105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.892
APC38688.1	APC39866.1	A7L45_00685	A7L45_07175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
APC38688.1	APC39936.1	A7L45_00685	A7L45_07555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.714
APC38688.1	APC39944.1	A7L45_00685	A7L45_07605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573