(3 nodes) Iron hydrogenase network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC40594.1	Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	APC42404.1	Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	APC42603.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC40594.1	APC42603.1	A7L45_11195	A7L45_06460	Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
APC42404.1	APC42603.1	A7L45_21360	A7L45_06460	Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
APC42603.1	APC40594.1	A7L45_06460	A7L45_11195	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
APC42603.1	APC42404.1	A7L45_06460	A7L45_21360	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584