(17 nodes) PAS domain network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC41503.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	APC41583.1	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	APC39379.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (422 aa)
	APC39010.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (478 aa)
	APC38995.1	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (570 aa)
	APC41700.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	APC41879.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (688 aa)
	APC38979.1	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	APC39363.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (821 aa)
	APC42575.1	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
	APC38721.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	APC40746.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	APC40649.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (567 aa)
	APC42614.1	Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (639 aa)
	APC41934.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (177 aa)
	APC42795.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	APC42491.1	Delta-lactam-biosynthetic de-N-acetylase; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. (663 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC38721.1	APC39363.1	A7L45_00855	A7L45_04455	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.649
APC38721.1	APC39379.1	A7L45_00855	A7L45_04540	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768
APC38721.1	APC40649.1	A7L45_00855	A7L45_11480	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
APC38721.1	APC41700.1	A7L45_00855	A7L45_17305	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
APC38721.1	APC41879.1	A7L45_00855	A7L45_18305	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.525
APC38721.1	APC42795.1	A7L45_00855	A7L45_20370	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
APC39010.1	APC39363.1	A7L45_02475	A7L45_04455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.456
APC39010.1	APC39379.1	A7L45_02475	A7L45_04540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.575
APC39363.1	APC38721.1	A7L45_04455	A7L45_00855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
APC39363.1	APC39010.1	A7L45_04455	A7L45_02475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.456
APC39363.1	APC39379.1	A7L45_04455	A7L45_04540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.942
APC39363.1	APC41879.1	A7L45_04455	A7L45_18305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.649
APC39363.1	APC41934.1	A7L45_04455	A7L45_18625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.487
APC39363.1	APC42795.1	A7L45_04455	A7L45_20370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
APC39379.1	APC38721.1	A7L45_04540	A7L45_00855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
APC39379.1	APC39010.1	A7L45_04540	A7L45_02475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.575
APC39379.1	APC39363.1	A7L45_04540	A7L45_04455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.942
APC39379.1	APC41879.1	A7L45_04540	A7L45_18305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768
APC39379.1	APC41934.1	A7L45_04540	A7L45_18625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.479
APC39379.1	APC42795.1	A7L45_04540	A7L45_20370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965