(4 nodes) Nitrogen regulatory protein P-II network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC40403.1	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family. (120 aa)
	APC39696.1	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	APC39697.1	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	APC40401.1	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family. (120 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC39696.1	APC39697.1	A7L45_06250	A7L45_06255	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
APC39696.1	APC40401.1	A7L45_06250	A7L45_10155	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.701
APC39696.1	APC40403.1	A7L45_06250	A7L45_10165	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.697
APC39697.1	APC39696.1	A7L45_06255	A7L45_06250	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
APC39697.1	APC40401.1	A7L45_06255	A7L45_10155	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.774
APC39697.1	APC40403.1	A7L45_06255	A7L45_10165	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.774
APC40401.1	APC39696.1	A7L45_10155	A7L45_06250	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
APC40401.1	APC39697.1	A7L45_10155	A7L45_06255	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APC40401.1	APC40403.1	A7L45_10155	A7L45_10165	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.934
APC40403.1	APC39696.1	A7L45_10165	A7L45_06250	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein NifHD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
APC40403.1	APC39697.1	A7L45_10165	A7L45_06255	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen fixation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APC40403.1	APC40401.1	A7L45_10165	A7L45_10155	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	Nitrogen regulatory PII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P(II) protein family.	0.934