(16 nodes) Lysine degradation network (Clostridium estertheticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC38848.1	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	APC38996.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
	APC42545.1	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (461 aa)
	APC39144.1	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	APC39328.1	3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	APC39329.1	3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	APC39330.1	Branched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	APC39331.1	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	APC39332.1	L-erythro-3,5-diaminohexanoate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	APC39333.1	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	APC39335.1	D-lysine 5,6-aminomutase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	APC39336.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	APC40740.1	4-aminobutyrate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (454 aa)
	APC41286.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	APC41384.1	Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	APC41576.1	Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)

Your Current Organism:

Clostridium estertheticum

NCBI taxonomy Id: 1552
Other names: C. estertheticum subsp. estertheticum, Clostridium estertheticum subsp. estertheticum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APC38848.1	APC39328.1	A7L45_01580	A7L45_04270	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
APC38848.1	APC39329.1	A7L45_01580	A7L45_04275	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APC38848.1	APC39332.1	A7L45_01580	A7L45_04290	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-erythro-3,5-diaminohexanoate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
APC38848.1	APC39333.1	A7L45_01580	A7L45_04295	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
APC38848.1	APC39335.1	A7L45_01580	A7L45_04310	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-lysine 5,6-aminomutase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
APC38848.1	APC39336.1	A7L45_01580	A7L45_04315	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
APC38996.1	APC39144.1	A7L45_02400	A7L45_03220	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APC38996.1	APC39330.1	A7L45_02400	A7L45_04280	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	Branched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
APC38996.1	APC39331.1	A7L45_02400	A7L45_04285	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APC38996.1	APC41286.1	A7L45_02400	A7L45_14970	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.901
APC39144.1	APC38996.1	A7L45_03220	A7L45_02400	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.943
APC39144.1	APC39329.1	A7L45_03220	A7L45_04275	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
APC39144.1	APC39330.1	A7L45_03220	A7L45_04280	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC39144.1	APC39331.1	A7L45_03220	A7L45_04285	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
APC39144.1	APC41286.1	A7L45_03220	A7L45_14970	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.943
APC39328.1	APC38848.1	A7L45_04270	A7L45_01580	3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
APC39328.1	APC39329.1	A7L45_04270	A7L45_04275	3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APC39328.1	APC39330.1	A7L45_04270	A7L45_04280	3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
APC39328.1	APC39331.1	A7L45_04270	A7L45_04285	3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
APC39328.1	APC39332.1	A7L45_04270	A7L45_04290	3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-erythro-3,5-diaminohexanoate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931