STRINGSTRING
LIP_0111 LIP_0111 LIP_0188 LIP_0188 LIP_0189 LIP_0189 LIP_0190 LIP_0190 LIP_0680 LIP_0680 LIP_0681 LIP_0681 LIP_0682 LIP_0682 LIP_0683 LIP_0683 LIP_0684 LIP_0684 LIP_0735 LIP_0735 LIP_0736 LIP_0736 LIP_0737 LIP_0737 LIP_1179 LIP_1179 LIP_1180 LIP_1180 LIP_1226 LIP_1226 LIP_1413 LIP_1413 sfsA sfsA LIP_1452 LIP_1452 LIP_1980 LIP_1980 LIP_2798 LIP_2798 LIP_2800 LIP_2800 LIP_2805 LIP_2805 LIP_2806 LIP_2806 LIP_2807 LIP_2807 LIP_2808 LIP_2808 LIP_2938 LIP_2938 LIP_2939 LIP_2939 LIP_2941 LIP_2941 LIP_2942 LIP_2942 LIP_2943 LIP_2943 LIP_2944 LIP_2944
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_0111HAD family hydrolase. (260 aa)
LIP_0188Hypothetical protein. (75 aa)
LIP_0189Hypothetical protein. (230 aa)
LIP_0190Hypothetical protein. (50 aa)
LIP_0680General stress protein. (318 aa)
LIP_0681Fur family transcriptional regulator; Belongs to the Fur family. (150 aa)
LIP_0682Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family. (360 aa)
LIP_0683ABC transporter related protein. (260 aa)
LIP_0684ABC transporter. (267 aa)
LIP_0735Iron transporter. (166 aa)
LIP_0736Ferrous iron transporter B. (480 aa)
LIP_0737Hypothetical protein. (184 aa)
LIP_1179Hypothetical protein. (62 aa)
LIP_1180Cation transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (294 aa)
LIP_1226CoA-binding protein. (154 aa)
LIP_1413Iron dependent repressor. (242 aa)
sfsASugar fermentation stimulation protein; Belongs to the SfsA family. (242 aa)
LIP_1452Fur family transcriptional regulator; Belongs to the Fur family. (136 aa)
LIP_1980Cation transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (302 aa)
LIP_2798MFS transporter permease; Belongs to the major facilitator superfamily. (498 aa)
LIP_2800Hypothetical protein. (174 aa)
LIP_2805Fur family transcriptional regulator; Belongs to the Fur family. (149 aa)
LIP_2806Fur family transcriptional regulator; Belongs to the Fur family. (175 aa)
LIP_2807Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins. (278 aa)
LIP_2808Hypothetical protein. (350 aa)
LIP_2938Membrane protein. (336 aa)
LIP_2939TetR family transcriptional regulator. (201 aa)
LIP_2941Hypothetical protein. (305 aa)
LIP_2942Hypothetical protein; Belongs to the glycosyltransferase 26 family. (643 aa)
LIP_2943Hypothetical protein. (643 aa)
LIP_2944Hypothetical protein. (239 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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