(72 nodes) Latent infection - Other responses of Mtb to phagocytosis, and Peptide transport network (Limnochorda pilosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIP_0525	Peptide ABC transporter permease. (301 aa)
	LIP_0526	Glutathione ABC transporter permease. (306 aa)
	LIP_0527	Peptide ABC transporter substrate-binding protein. (546 aa)
	LIP_0529	Glutathione ABC transporter permease GsiD. (296 aa)
	LIP_0530	Peptide ABC transporter. (324 aa)
	LIP_0531	ABC transporter substrate-binding protein. (506 aa)
	LIP_0573	Hypothetical protein. (426 aa)
	LIP_0574	Hypothetical protein. (746 aa)
	LIP_0575	Hypothetical protein. (822 aa)
	LIP_0576	Peptide ABC transporter permease. (351 aa)
	LIP_0577	Hypothetical protein. (483 aa)
	LIP_0578	Glutathione ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (663 aa)
	LIP_0607	ABC transporter substrate-binding protein. (504 aa)
	LIP_0632	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (713 aa)
	LIP_0633	Peptide ABC transporter permease. (272 aa)
	LIP_0634	Peptide ABC transporter permease. (318 aa)
	LIP_0635	Peptide ABC transporter substrate-binding protein. (540 aa)
	LIP_0719	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (334 aa)
	LIP_0720	Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily. (323 aa)
	LIP_0721	ABC transporter permease. (309 aa)
	LIP_0722	ABC transporter permease. (392 aa)
	LIP_0723	ABC transporter substrate-binding protein. (628 aa)
	LIP_0939	Hypothetical protein. (87 aa)
	LIP_0940	ABC transporter substrate-binding protein. (568 aa)
	LIP_0941	Peptide ABC transporter permease. (353 aa)
	LIP_0942	ABC transporter permease. (278 aa)
	LIP_0943	Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily. (355 aa)
	LIP_0944	Peptide ABC transporter ATPase. (266 aa)
	LIP_0945	Hypothetical protein. (562 aa)
	LIP_1047	Peptide ABC transporter permease. (309 aa)
	LIP_1048	Peptide ABC transporter permease. (351 aa)
	LIP_1049	ABC transporter substrate-binding protein. (524 aa)
	LIP_1421	Peptide ABC transporter substrate-binding protein. (506 aa)
	LIP_1422	Peptide ABC transporter permease. (322 aa)
	LIP_1423	Peptide ABC transporter permease. (312 aa)
	LIP_1503	Peptide ABC transporter substrate-binding protein. (559 aa)
	LIP_1504	Glutathione ABC transporter permease. (308 aa)
	LIP_1505	Peptide ABC transporter permease. (306 aa)
	LIP_1506	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (331 aa)
	LIP_1507	Peptide ABC transporter substrate-binding protein; Belongs to the ABC transporter superfamily. (368 aa)
	LIP_1722	Peptide ABC transporter substrate-binding protein. (515 aa)
	LIP_1723	Peptide ABC transporter permease. (342 aa)
	LIP_1724	Peptide ABC transporter permease. (290 aa)
	LIP_1841	ABC transporter permease. (351 aa)
	LIP_1842	ABC transporter substrate-binding protein. (323 aa)
	LIP_1843	ABC transporter substrate-binding protein. (576 aa)
	LIP_2024	Peptide ABC transporter substrate-binding protein. (531 aa)
	LIP_2025	Peptide ABC transporter permease. (314 aa)
	LIP_2026	Peptide ABC transporter permease. (301 aa)
	LIP_2132	Peptide ABC transporter permease. (304 aa)
	LIP_2133	Glutathione ABC transporter permease. (315 aa)
	LIP_2134	Hypothetical protein. (515 aa)
	LIP_2136	Hypothetical protein. (343 aa)
	LIP_2137	Peptide ABC transporter permease. (346 aa)
	LIP_2138	Peptide ABC transporter substrate-binding protein. (489 aa)
	LIP_2154	IclR family transcriptional regulator. (271 aa)
	LIP_2155	Peptide ABC transporter permease. (316 aa)
	LIP_2156	Peptide ABC transporter permease. (302 aa)
	LIP_2157	Oligopeptide-binding protein AppA. (534 aa)
	LIP_2158	Hypothetical protein. (487 aa)
	LIP_2160	Peptidase M28. (599 aa)
	LIP_2228	Diguanylate cyclase. (296 aa)
	LIP_2229	Glutathione ABC transporter permease. (306 aa)
	LIP_2230	Peptide ABC transporter substrate-binding protein. (530 aa)
	LIP_2346	Glutathione ABC transporter permease GsiD. (282 aa)
	LIP_2347	Peptide ABC transporter. (312 aa)
	LIP_2348	Hypothetical protein. (516 aa)
	LIP_2459	Peptide ABC transporter permease. (371 aa)
	LIP_2460	ABC transporter permease. (323 aa)
	LIP_2461	ABC transporter substrate-binding protein. (592 aa)
	LIP_3220	Peptide ABC transporter permease. (272 aa)
	LIP_3221	Peptide ABC transporter. (314 aa)

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_0525	LIP_0526	Peptide ABC transporter permease.	Glutathione ABC transporter permease.	0.959
LIP_0525	LIP_0527	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.989
LIP_0525	LIP_0530	Peptide ABC transporter permease.	Peptide ABC transporter.	0.980
LIP_0525	LIP_0531	Peptide ABC transporter permease.	ABC transporter substrate-binding protein.	0.500
LIP_0525	LIP_0576	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.746
LIP_0525	LIP_0578	Peptide ABC transporter permease.	Glutathione ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.939
LIP_0525	LIP_0607	Peptide ABC transporter permease.	ABC transporter substrate-binding protein.	0.407
LIP_0525	LIP_0632	Peptide ABC transporter permease.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.862
LIP_0525	LIP_0634	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.784
LIP_0525	LIP_0635	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.501
LIP_0525	LIP_0719	Peptide ABC transporter permease.	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.942
LIP_0525	LIP_0720	Peptide ABC transporter permease.	Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.970
LIP_0525	LIP_0722	Peptide ABC transporter permease.	ABC transporter permease.	0.739
LIP_0525	LIP_0941	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.619
LIP_0525	LIP_0943	Peptide ABC transporter permease.	Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.900
LIP_0525	LIP_0944	Peptide ABC transporter permease.	Peptide ABC transporter ATPase.	0.952
LIP_0525	LIP_1048	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.750
LIP_0525	LIP_1049	Peptide ABC transporter permease.	ABC transporter substrate-binding protein.	0.421
LIP_0525	LIP_1421	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.504
LIP_0525	LIP_1422	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.789