(5 nodes) ABC transporter type 1, GsiC-like, N-terminal domain, and Peptide/nickel binding protein, MppA-type network (Limnochorda pilosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIP_1047	Peptide ABC transporter permease. (309 aa)
	LIP_1048	Peptide ABC transporter permease. (351 aa)
	LIP_1049	ABC transporter substrate-binding protein. (524 aa)
	LIP_2229	Glutathione ABC transporter permease. (306 aa)
	LIP_2230	Peptide ABC transporter substrate-binding protein. (530 aa)

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_1047	LIP_1048	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.992
LIP_1047	LIP_1049	Peptide ABC transporter permease.	ABC transporter substrate-binding protein.	0.872
LIP_1047	LIP_2229	Peptide ABC transporter permease.	Glutathione ABC transporter permease.	0.824
LIP_1047	LIP_2230	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.796
LIP_1048	LIP_1047	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.992
LIP_1048	LIP_1049	Peptide ABC transporter permease.	ABC transporter substrate-binding protein.	0.913
LIP_1048	LIP_2230	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.796
LIP_1049	LIP_1047	ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.872
LIP_1049	LIP_1048	ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.913
LIP_1049	LIP_2229	ABC transporter substrate-binding protein.	Glutathione ABC transporter permease.	0.531
LIP_1049	LIP_2230	ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.523
LIP_2229	LIP_1047	Glutathione ABC transporter permease.	Peptide ABC transporter permease.	0.824
LIP_2229	LIP_1049	Glutathione ABC transporter permease.	ABC transporter substrate-binding protein.	0.531
LIP_2229	LIP_2230	Glutathione ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.968
LIP_2230	LIP_1047	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.796
LIP_2230	LIP_1048	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.796
LIP_2230	LIP_1049	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.523
LIP_2230	LIP_2229	Peptide ABC transporter substrate-binding protein.	Glutathione ABC transporter permease.	0.968