STRINGSTRING
LIP_0048 LIP_0048 LIP_0110 LIP_0110 argH argH LIP_0333 LIP_0333 LIP_0477 LIP_0477 LIP_0519 LIP_0519 LIP_0520 LIP_0520 LIP_0674 LIP_0674 LIP_0675 LIP_0675 LIP_0676 LIP_0676 LIP_0677 LIP_0677 LIP_1012 LIP_1012 LIP_1013 LIP_1013 LIP_1014 LIP_1014 argC argC argJ argJ argB argB LIP_1245 LIP_1245 argG argG argH-2 argH-2 LIP_1371 LIP_1371 LIP_1428 LIP_1428 LIP_1429 LIP_1429 LIP_1534 LIP_1534 speH speH LIP_1765 LIP_1765 LIP_2084 LIP_2084 LIP_2085 LIP_2085 LIP_2086 LIP_2086 LIP_2087 LIP_2087 LIP_2088 LIP_2088 LIP_2089 LIP_2089 LIP_2090 LIP_2090 LIP_2329 LIP_2329 mtnA mtnA argR argR LIP_2714 LIP_2714 LIP_2764 LIP_2764 LIP_2765 LIP_2765 LIP_2766 LIP_2766 LIP_2953 LIP_2953 LIP_2954 LIP_2954 LIP_2979 LIP_2979 LIP_2981 LIP_2981 LIP_2982 LIP_2982 LIP_2983 LIP_2983 metK metK LIP_2990 LIP_2990 LIP_3066 LIP_3066 LIP_3067 LIP_3067 LIP_3148 LIP_3148 speE speE LIP_3150 LIP_3150 LIP_3185 LIP_3185 LIP_3363 LIP_3363 LIP_3364 LIP_3364 LIP_3365 LIP_3365 LIP_3400 LIP_3400 LIP_3401 LIP_3401 metN metN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_0048Pyruvoyl-dependent arginine decarboxylase. (166 aa)
LIP_0110Amino acid ABC transporter ATPase. (261 aa)
argHArgininosuccinate lyase. (512 aa)
LIP_0333Dioxygenase; Belongs to the nlpA lipoprotein family. (283 aa)
LIP_0477DNA methyltransferase. (464 aa)
LIP_0519Glutamine ABC transporter permease. (216 aa)
LIP_0520Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (248 aa)
LIP_0674Amino acid ABC transporter substrate-binding protein. (341 aa)
LIP_0675Polar amino acid ABC transporter permease. (404 aa)
LIP_0676Amine acid ABC transporter permease. (335 aa)
LIP_0677Polar amino acid ABC transporter ATP-binding protein. (262 aa)
LIP_1012ABC transporter substrate-binding protein. (351 aa)
LIP_1013ABC transporter. (568 aa)
LIP_1014Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (405 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (340 aa)
argJOrnithine acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. (405 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (296 aa)
LIP_1245Acetylornithine aminotransferase. (432 aa)
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (406 aa)
argH-2Argininosuccinate lyase. (459 aa)
LIP_1371Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. (327 aa)
LIP_14285'-methylthioadenosine phosphorylase; Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage. (290 aa)
LIP_1429Hypothetical protein. (87 aa)
LIP_1534Carbamate kinase; Belongs to the carbamate kinase family. (312 aa)
speHS-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily. (133 aa)
LIP_1765Putrescine--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (471 aa)
LIP_2084Guanidinobutyrase; Belongs to the arginase family. (315 aa)
LIP_2085Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (477 aa)
LIP_2086Putrescine--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)
LIP_2087Polyamine ABC transporter substrate-binding protein. (350 aa)
LIP_2088ABC transporter permease. (262 aa)
LIP_2089Spermidine/putrescine ABC transporter permease. (301 aa)
LIP_2090Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily. (360 aa)
LIP_2329Acetylornithine deacetylase. (422 aa)
mtnAMethylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). (347 aa)
argRArginine repressor ArgR; Regulates arginine biosynthesis genes. (169 aa)
LIP_2714Arginine deiminase. (401 aa)
LIP_2764ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (395 aa)
LIP_2765Membrane protein. (575 aa)
LIP_2766Hypothetical protein. (362 aa)
LIP_2953Glutamine ABC transporter permease. (233 aa)
LIP_2954Hypothetical protein; Belongs to the bacterial solute-binding protein 3 family. (251 aa)
LIP_29795'-methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage. (265 aa)
LIP_2981Hypothetical protein. (162 aa)
LIP_2982Hypothetical protein. (612 aa)
LIP_2983Dolichyl-phosphate mannose synthase. (258 aa)
metKS-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (408 aa)
LIP_2990Hypothetical protein. (297 aa)
LIP_3066ABC transporter. (242 aa)
LIP_3067Hypothetical protein. (683 aa)
LIP_3148Agmatinase; Belongs to the arginase family. (289 aa)
speESpermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (279 aa)
LIP_3150Pyruvoyl-dependent arginine decarboxylase. (152 aa)
LIP_3185Arginine decarboxylase. (424 aa)
LIP_3363ABC transporter; Belongs to the ABC transporter superfamily. (373 aa)
LIP_3364Iron ABC transporter permease. (530 aa)
LIP_3365Iron ABC transporter substrate-binding protein. (341 aa)
LIP_3400Methionine ABC transporter substrate-binding protein; Belongs to the nlpA lipoprotein family. (279 aa)
LIP_3401Methionine ABC transporter permease. (219 aa)
metNMethionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (344 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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