STRINGSTRING
LIP_1765 LIP_1765 LIP_2085 LIP_2085 LIP_2086 LIP_2086 LIP_2087 LIP_2087 LIP_2088 LIP_2088 LIP_2089 LIP_2089 LIP_2090 LIP_2090
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_1765Putrescine--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (471 aa)
LIP_2085Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (477 aa)
LIP_2086Putrescine--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)
LIP_2087Polyamine ABC transporter substrate-binding protein. (350 aa)
LIP_2088ABC transporter permease. (262 aa)
LIP_2089Spermidine/putrescine ABC transporter permease. (301 aa)
LIP_2090Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily. (360 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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