STRINGSTRING
LIP_1011 LIP_1011 LIP_1251 LIP_1251 LIP_1539 LIP_1539 LIP_1701 LIP_1701 LIP_2794 LIP_2794 LIP_2795 LIP_2795 LIP_2796 LIP_2796 LIP_2797 LIP_2797 LIP_2829 LIP_2829 LIP_3136 LIP_3136 LIP_3505 LIP_3505 LIP_3506 LIP_3506 LIP_3507 LIP_3507 LIP_3508 LIP_3508 cobT cobT LIP_3510 LIP_3510 LIP_3511 LIP_3511 LIP_3512 LIP_3512 LIP_3513 LIP_3513 cbiA cbiA LIP_3515 LIP_3515 cobD cobD cobS cobS LIP_3518 LIP_3518 LIP_3519 LIP_3519 cobQ cobQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_1011Iron permease. (517 aa)
LIP_1251Hypothetical protein. (140 aa)
LIP_1539ABC transporter substrate-binding protein. (301 aa)
LIP_1701Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family. (211 aa)
LIP_2794ABC transporter substrate-binding protein. (309 aa)
LIP_2795Hypothetical protein. (231 aa)
LIP_2796Corrinoid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (349 aa)
LIP_2797ABC transporter. (275 aa)
LIP_2829Fatty acid-binding protein DegV. (277 aa)
LIP_3136cob(I)yrinic acid a c-diamide adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (201 aa)
LIP_3505Hypothetical protein. (183 aa)
LIP_3506Hypothetical protein. (249 aa)
LIP_3507Hypothetical protein. (224 aa)
LIP_3508Radical SAM protein. (340 aa)
cobTNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). (357 aa)
LIP_3510ABC transporter. (271 aa)
LIP_3511Iron ABC transporter substrate-binding protein. (314 aa)
LIP_3512Iron ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (359 aa)
LIP_3513Cobinamide adenolsyltransferase. (170 aa)
cbiACobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. (508 aa)
LIP_3515Cobinamide kinase. (213 aa)
cobDCobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (332 aa)
cobSCobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. (272 aa)
LIP_3518GHMP kinase. (164 aa)
LIP_3519Histidinol-phosphate aminotransferase. (381 aa)
cobQCobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (504 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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