(24 nodes) TRAP transporter solute receptor DctP, and TRAP transporter large membrane protein DctM network (Limnochorda pilosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIP_0263	C4-dicarboxylate ABC transporter permease. (429 aa)
	LIP_0264	TRAP transporter. (187 aa)
	LIP_0265	TRAP dicarboxylate transporter subunit DctP. (354 aa)
	LIP_0801	C4-dicarboxylate ABC transporter substrate-binding protein. (339 aa)
	LIP_0802	C4-dicarboxylate ABC transporter permease. (213 aa)
	LIP_0803	C4-dicarboxylate ABC transporter permease. (424 aa)
	LIP_0814	ABC transporter substrate-binding protein. (386 aa)
	LIP_0815	Membrane protein. (205 aa)
	LIP_0816	TRAP dicarboxylate transporter subunit DctM. (437 aa)
	LIP_1017	TRAP dicarboxylate transporter subunit DctM. (634 aa)
	LIP_1018	C4-dicarboxylate ABC transporter. (332 aa)
	LIP_2079	C4-dicarboxylate ABC transporter permease. (427 aa)
	LIP_2080	C4-dicarboxylate ABC transporter permease. (159 aa)
	LIP_2081	C4-dicarboxylate ABC transporter substrate-binding protein. (326 aa)
	LIP_2094	C4-dicarboxylate ABC transporter substrate-binding protein. (359 aa)
	LIP_2095	Hypothetical protein. (185 aa)
	LIP_2096	Membrane protein. (428 aa)
	LIP_2097	Hypothetical protein. (231 aa)
	LIP_2100	C4-dicarboxylate ABC transporter permease. (423 aa)
	LIP_2101	C4-dicarboxylate ABC transporter permease. (187 aa)
	LIP_2102	C4-dicarboxylate ABC transporter substrate-binding protein. (329 aa)
	LIP_2865	C4-dicarboxylate ABC transporter. (444 aa)
	LIP_2866	Hypothetical protein. (141 aa)
	LIP_2867	ABC transporter substrate-binding protein. (410 aa)

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_0263	LIP_0264	C4-dicarboxylate ABC transporter permease.	TRAP transporter.	0.956
LIP_0263	LIP_0265	C4-dicarboxylate ABC transporter permease.	TRAP dicarboxylate transporter subunit DctP.	0.977
LIP_0263	LIP_0801	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter substrate-binding protein.	0.903
LIP_0263	LIP_0802	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter permease.	0.836
LIP_0263	LIP_1018	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter.	0.802
LIP_0263	LIP_2079	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter permease.	0.908
LIP_0263	LIP_2080	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter permease.	0.820
LIP_0263	LIP_2081	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter substrate-binding protein.	0.970
LIP_0263	LIP_2096	C4-dicarboxylate ABC transporter permease.	Membrane protein.	0.919
LIP_0263	LIP_2101	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter permease.	0.838
LIP_0263	LIP_2102	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter substrate-binding protein.	0.855
LIP_0264	LIP_0263	TRAP transporter.	C4-dicarboxylate ABC transporter permease.	0.956
LIP_0264	LIP_0265	TRAP transporter.	TRAP dicarboxylate transporter subunit DctP.	0.961
LIP_0264	LIP_0801	TRAP transporter.	C4-dicarboxylate ABC transporter substrate-binding protein.	0.823
LIP_0264	LIP_0802	TRAP transporter.	C4-dicarboxylate ABC transporter permease.	0.764
LIP_0264	LIP_0803	TRAP transporter.	C4-dicarboxylate ABC transporter permease.	0.770
LIP_0264	LIP_1017	TRAP transporter.	TRAP dicarboxylate transporter subunit DctM.	0.713
LIP_0264	LIP_1018	TRAP transporter.	C4-dicarboxylate ABC transporter.	0.744
LIP_0264	LIP_2079	TRAP transporter.	C4-dicarboxylate ABC transporter permease.	0.758
LIP_0264	LIP_2081	TRAP transporter.	C4-dicarboxylate ABC transporter substrate-binding protein.	0.807