(5 nodes) Polyamine transport network (Limnochorda pilosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIP_2087	Polyamine ABC transporter substrate-binding protein. (350 aa)
	LIP_2090	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily. (360 aa)
	LIP_2764	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (395 aa)
	LIP_3363	ABC transporter; Belongs to the ABC transporter superfamily. (373 aa)
	LIP_1014	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (405 aa)

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_1014	LIP_2087	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine ABC transporter substrate-binding protein.	0.925
LIP_1014	LIP_2090	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.423
LIP_1014	LIP_2764	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.447
LIP_1014	LIP_3363	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter; Belongs to the ABC transporter superfamily.	0.443
LIP_2087	LIP_1014	Polyamine ABC transporter substrate-binding protein.	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.925
LIP_2087	LIP_2090	Polyamine ABC transporter substrate-binding protein.	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.996
LIP_2087	LIP_2764	Polyamine ABC transporter substrate-binding protein.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.911
LIP_2087	LIP_3363	Polyamine ABC transporter substrate-binding protein.	ABC transporter; Belongs to the ABC transporter superfamily.	0.871
LIP_2090	LIP_1014	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.423
LIP_2090	LIP_2087	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	Polyamine ABC transporter substrate-binding protein.	0.996
LIP_2090	LIP_2764	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.423
LIP_2090	LIP_3363	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	ABC transporter; Belongs to the ABC transporter superfamily.	0.439
LIP_2764	LIP_1014	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.447
LIP_2764	LIP_2087	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine ABC transporter substrate-binding protein.	0.911
LIP_2764	LIP_2090	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.423
LIP_2764	LIP_3363	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter; Belongs to the ABC transporter superfamily.	0.915
LIP_3363	LIP_1014	ABC transporter; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.443
LIP_3363	LIP_2087	ABC transporter; Belongs to the ABC transporter superfamily.	Polyamine ABC transporter substrate-binding protein.	0.871
LIP_3363	LIP_2090	ABC transporter; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.	0.439
LIP_3363	LIP_2764	ABC transporter; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.915