STRINGSTRING
LIP_1140 LIP_1140 LIP_3648 LIP_3648 LIP_3619 LIP_3619 ftsH ftsH LIP_3491 LIP_3491 LIP_3471 LIP_3471 LIP_3470 LIP_3470 LIP_3469 LIP_3469 LIP_3462 LIP_3462 LIP_3461 LIP_3461 LIP_3399 LIP_3399 LIP_3384 LIP_3384 LIP_3368 LIP_3368 LIP_3350 LIP_3350 LIP_3345 LIP_3345 LIP_3319 LIP_3319 LIP_3308 LIP_3308 LIP_3225 LIP_3225 LIP_3154 LIP_3154 LIP_3070 LIP_3070 LIP_3051 LIP_3051 LIP_2995 LIP_2995 recD2 recD2 uvrB uvrB uvrA uvrA LIP_2833 LIP_2833 LIP_2814 LIP_2814 LIP_2793 LIP_2793 LIP_2785 LIP_2785 LIP_2624 LIP_2624 mutS2 mutS2 ruvA ruvA ruvB ruvB LIP_2107 LIP_2107 LIP_1952 LIP_1952 LIP_1815 LIP_1815 LIP_1775 LIP_1775 LIP_1733 LIP_1733 mutL mutL LIP_1718 LIP_1718 LIP_1715 LIP_1715 LIP_1654 LIP_1654 hslU hslU smc smc LIP_1606 LIP_1606 LIP_1583 LIP_1583 LIP_1330 LIP_1330 clpX clpX LIP_1121 LIP_1121 LIP_1026 LIP_1026 LIP_0830 LIP_0830 LIP_0829 LIP_0829 LIP_0664 LIP_0664 LIP_0476 LIP_0476
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_1140ATPase. (298 aa)
LIP_3648Sporulation initiation inhibitor protein Soj. (251 aa)
LIP_3619Helicase DnaB. (469 aa)
ftsHCell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (648 aa)
LIP_3491RNA helicase; Belongs to the DEAD box helicase family. (392 aa)
LIP_3471Hypothetical protein. (127 aa)
LIP_3470ATPase. (899 aa)
LIP_3469ATPase P. (91 aa)
LIP_3462Copper-exporting ATPase. (124 aa)
LIP_3461Hypothetical protein. (725 aa)
LIP_3399ATPase. (935 aa)
LIP_3384ATPase. (631 aa)
LIP_3368ATPase P. (721 aa)
LIP_3350FeS assembly SUF system protein. (94 aa)
LIP_3345HAD family hydrolase. (681 aa)
LIP_3319Anion transporter. (323 aa)
LIP_3308Clp protease ClpX; Belongs to the ClpA/ClpB family. (813 aa)
LIP_3225Hypothetical protein. (234 aa)
LIP_3154ATPase AAA. (353 aa)
LIP_3070Hypothetical protein. (102 aa)
LIP_3051Hypothetical protein. (542 aa)
LIP_2995ATPase P. (761 aa)
recD2Helicase; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (973 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (677 aa)
uvrAExcinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (989 aa)
LIP_2833Chromosome partitioning ATPase. (329 aa)
LIP_2814ATP-dependent DNA helicase PcrA. (716 aa)
LIP_2793ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (360 aa)
LIP_2785Septum site-determining protein MinD. (271 aa)
LIP_2624ATPase AAA. (441 aa)
mutS2DNA mismatch repair protein MutS; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (820 aa)
ruvAHolliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (233 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (355 aa)
LIP_2107Hypothetical protein. (1547 aa)
LIP_1952Hypothetical protein. (185 aa)
LIP_1815Microtubule-severing ATPase; Belongs to the AAA ATPase family. (501 aa)
LIP_1775Stage IV sporulation protein A. (492 aa)
LIP_1733Stage V sporulation protein K. (332 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (608 aa)
LIP_1718Heavy metal translocating P-type ATPase. (659 aa)
LIP_1715Hypothetical protein. (328 aa)
LIP_1654ATP synthase. (436 aa)
hslUClp protease ATPase; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (463 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1197 aa)
LIP_1606ATP-dependent DNA helicase RecG. (686 aa)
LIP_1583ATPase. (927 aa)
LIP_1330Lon protease. (587 aa)
clpXATP-dependent protease; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (418 aa)
LIP_1121GTP-binding protein YchF. (365 aa)
LIP_1026Hypothetical protein. (456 aa)
LIP_0830Hypothetical protein; ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. (1145 aa)
LIP_0829Hypothetical protein. (1046 aa)
LIP_0664Clp protease. (150 aa)
LIP_0476Hypothetical protein. (520 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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