(23 nodes) Heme binding network (Limnochorda pilosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIP_3351	Hypothetical protein. (431 aa)
	LIP_2876	Hypothetical protein. (219 aa)
	LIP_2753	Nitric oxide reductase. (788 aa)
	LIP_2529	Cytochrome C. (448 aa)
	LIP_1961	Cytochrome C oxidase subunit I. (552 aa)
	LIP_1539	ABC transporter substrate-binding protein. (301 aa)
	LIP_1513	Hypothetical protein. (313 aa)
	LIP_1414	Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. (132 aa)
	LIP_1412	Cytochrome C assembly protein. (228 aa)
	LIP_1269	Cytochrome C biogenesis protein ResC. (277 aa)
	LIP_1158	Succinate dehydrogenase. (126 aa)
	LIP_1054	Cytochrome P450. (403 aa)
	LIP_0706	Heme peroxidase. (251 aa)
	LIP_0381	Hypothetical protein. (368 aa)
	LIP_0368	Hypothetical protein. (445 aa)
	LIP_0215	Cytochrome C biogenesis protein. (673 aa)
	LIP_0214	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. (144 aa)
	LIP_0105	Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family. (577 aa)
	LIP_0101	Cytochrome C biogenesis protein. (717 aa)
	LIP_3511	Iron ABC transporter substrate-binding protein. (314 aa)
	LIP_3441	Cytochrome C biogenesis protein. (668 aa)
	LIP_3359	Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (591 aa)
	LIP_3358	Hypothetical protein. (84 aa)

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_0101	LIP_0214	Cytochrome C biogenesis protein.	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.859
LIP_0101	LIP_1412	Cytochrome C biogenesis protein.	Cytochrome C assembly protein.	0.833
LIP_0101	LIP_1414	Cytochrome C biogenesis protein.	Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.859
LIP_0105	LIP_1158	Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family.	Succinate dehydrogenase.	0.490
LIP_0105	LIP_1513	Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family.	Hypothetical protein.	0.899
LIP_0105	LIP_1961	Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family.	Cytochrome C oxidase subunit I.	0.926
LIP_0105	LIP_2529	Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family.	Cytochrome C.	0.928
LIP_0105	LIP_2876	Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family.	Hypothetical protein.	0.965
LIP_0214	LIP_0101	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome C biogenesis protein.	0.859
LIP_0214	LIP_0215	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome C biogenesis protein.	0.966
LIP_0214	LIP_1412	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome C assembly protein.	0.988
LIP_0214	LIP_3441	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	Cytochrome C biogenesis protein.	0.859
LIP_0215	LIP_0214	Cytochrome C biogenesis protein.	CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.966
LIP_0215	LIP_1412	Cytochrome C biogenesis protein.	Cytochrome C assembly protein.	0.833
LIP_0215	LIP_1414	Cytochrome C biogenesis protein.	Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.859
LIP_0368	LIP_0381	Hypothetical protein.	Hypothetical protein.	0.415
LIP_0381	LIP_0368	Hypothetical protein.	Hypothetical protein.	0.415
LIP_1158	LIP_0105	Succinate dehydrogenase.	Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family.	0.490
LIP_1158	LIP_1961	Succinate dehydrogenase.	Cytochrome C oxidase subunit I.	0.490
LIP_1412	LIP_0101	Cytochrome C assembly protein.	Cytochrome C biogenesis protein.	0.833