STRINGSTRING
LIP_3456 LIP_3456 LIP_0026 LIP_0026 LIP_0034 LIP_0034 LIP_0062 LIP_0062 LIP_0073 LIP_0073 LIP_0078 LIP_0078 LIP_0104 LIP_0104 LIP_0105 LIP_0105 LIP_0106 LIP_0106 LIP_0108 LIP_0108 LIP_0110 LIP_0110 LIP_0192 LIP_0192 LIP_0196 LIP_0196 LIP_0247 LIP_0247 LIP_0266 LIP_0266 LIP_0314 LIP_0314 LIP_0345 LIP_0345 LIP_0395 LIP_0395 LIP_0403 LIP_0403 LIP_0408 LIP_0408 LIP_0412 LIP_0412 LIP_0423 LIP_0423 LIP_0466 LIP_0466 rbsA rbsA LIP_0599 LIP_0599 LIP_0603 LIP_0603 LIP_0624 LIP_0624 LIP_0661 LIP_0661 LIP_0677 LIP_0677 LIP_0820 LIP_0820 LIP_0850 LIP_0850 LIP_0856 LIP_0856 LIP_0862 LIP_0862 LIP_0863 LIP_0863 LIP_0872 LIP_0872 LIP_0886 LIP_0886 LIP_0918 LIP_0918 LIP_0999 LIP_0999 LIP_1014 LIP_1014 LIP_1150 LIP_1150 LIP_1151 LIP_1151 LIP_1191 LIP_1191 LIP_1192 LIP_1192 LIP_1197 LIP_1197 LIP_1272 LIP_1272 LIP_1290 LIP_1290 hppA hppA LIP_1344 LIP_1344 LIP_1359 LIP_1359 LIP_1397 LIP_1397 LIP_1493 LIP_1493 LIP_1654 LIP_1654 LIP_1718 LIP_1718 nuoA nuoA nuoB nuoB nuoC nuoC LIP_1823 LIP_1823 LIP_1825 LIP_1825 LIP_1826 LIP_1826 nuoN nuoN LIP_1832 LIP_1832 LIP_1833 LIP_1833 LIP_1835 LIP_1835 LIP_1836 LIP_1836 LIP_1837 LIP_1837 LIP_1838 LIP_1838 LIP_1929 LIP_1929 rbsA-2 rbsA-2 rbsA-3 rbsA-3 LIP_1960 LIP_1960 LIP_1961 LIP_1961 LIP_1974 LIP_1974 LIP_1975 LIP_1975 LIP_1978 LIP_1978 LIP_1981 LIP_1981 LIP_1991 LIP_1991 LIP_1995 LIP_1995 LIP_2009 LIP_2009 LIP_2036 LIP_2036 LIP_2065 LIP_2065 LIP_2072 LIP_2072 LIP_2089 LIP_2089 LIP_2090 LIP_2090 LIP_2116 LIP_2116 LIP_2122 LIP_2122 LIP_2145 LIP_2145 LIP_2183 LIP_2183 LIP_2196 LIP_2196 LIP_2203 LIP_2203 LIP_2216 LIP_2216 LIP_2237 LIP_2237 LIP_2258 LIP_2258 LIP_2261 LIP_2261 LIP_2286 LIP_2286 LIP_2331 LIP_2331 LIP_2341 LIP_2341 LIP_2443 LIP_2443 LIP_2451 LIP_2451 LIP_2454 LIP_2454 LIP_2465 LIP_2465 secF secF secD secD LIP_2698 LIP_2698 LIP_2713 LIP_2713 LIP_2753 LIP_2753 LIP_2764 LIP_2764 LIP_2880 LIP_2880 LIP_2911 LIP_2911 LIP_2923 LIP_2923 secA secA LIP_2995 LIP_2995 LIP_3003 LIP_3003 LIP_3004 LIP_3004 pstB pstB LIP_3038 LIP_3038 LIP_3039 LIP_3039 LIP_3059 LIP_3059 LIP_3066 LIP_3066 atpD atpD atpA atpA nuoN-2 nuoN-2 LIP_3108 LIP_3108 LIP_3110 LIP_3110 LIP_3114 LIP_3114 nuoC-2 nuoC-2 nuoB-2 nuoB-2 LIP_3119 LIP_3119 pstB-2 pstB-2 LIP_3225 LIP_3225 LIP_3317 LIP_3317 LIP_3345 LIP_3345 LIP_3351 LIP_3351 LIP_3363 LIP_3363 LIP_3368 LIP_3368 LIP_3384 LIP_3384 metN metN LIP_3421 LIP_3421 LIP_3450 LIP_3450 LIP_3461 LIP_3461 LIP_3469 LIP_3469 LIP_3470 LIP_3470 cobD cobD cobQ cobQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_3456Cytochrome C oxidase subunit II. (118 aa)
LIP_0026Hypothetical protein. (283 aa)
LIP_0034ABC transporter. (236 aa)
LIP_0062K+dependent Na+ exchanger related-protein. (329 aa)
LIP_0073Sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (604 aa)
LIP_0078ABC transporter permease. (365 aa)
LIP_0104Cytochrome C oxidase subunit III. (211 aa)
LIP_0105Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family. (577 aa)
LIP_0106Cytochrome C oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (274 aa)
LIP_0108Bb3-type cytochrome oxidase subunit IV. (202 aa)
LIP_0110Amino acid ABC transporter ATPase. (261 aa)
LIP_0192ABC transporter. (289 aa)
LIP_0196ABC transporter permease. (291 aa)
LIP_0247Sodium:melibiose symporter. (441 aa)
LIP_0266Hypothetical protein. (329 aa)
LIP_0314ABC transporter permease. (292 aa)
LIP_0345ABC transporter permease. (301 aa)
LIP_0395ABC transporter permease. (306 aa)
LIP_0403ABC transporter permease. (311 aa)
LIP_0408Sulfate permease. (560 aa)
LIP_0412ABC transporter. (301 aa)
LIP_0423Sugar ABC transporter permease. (321 aa)
LIP_0466Sugar ABC transporter permease. (308 aa)
rbsAD-ribose transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (512 aa)
LIP_0599NADH dehydrogenase subunit F. (611 aa)
LIP_0603Sugar ABC transporter permease. (51 aa)
LIP_0624Hypothetical protein. (193 aa)
LIP_0661Potassium transporter. (496 aa)
LIP_0677Polar amino acid ABC transporter ATP-binding protein. (262 aa)
LIP_0820Sodium:phosphate symporter. (310 aa)
LIP_0850Hypothetical protein. (389 aa)
LIP_0856Hypothetical protein. (449 aa)
LIP_0862Hypothetical protein. (380 aa)
LIP_0863Membrane protein. (253 aa)
LIP_0872NADP oxidoreductase. (658 aa)
LIP_0886Multidrug transporter MatE. (455 aa)
LIP_0918ABC transporter permease. (305 aa)
LIP_0999Taurine ABC transporter substrate-binding protein. (355 aa)
LIP_1014Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (405 aa)
LIP_1150Sugar ABC transporter permease. (285 aa)
LIP_1151Maltose ABC transporter permease. (515 aa)
LIP_1191Maltose ABC transporter permease. (507 aa)
LIP_1192Sugar ABC transporter permease. (285 aa)
LIP_1197Glucose transporter. (371 aa)
LIP_1272ABC transporter permease. (329 aa)
LIP_1290Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (73 aa)
hppAPotassium transporter; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily. (681 aa)
LIP_1344(2Fe-2S)-binding protein. (152 aa)
LIP_1359ABC transporter substrate-binding protein. (338 aa)
LIP_1397Hypothetical protein. (151 aa)
LIP_1493Molybdenum ABC transporter permease. (303 aa)
LIP_1654ATP synthase. (436 aa)
LIP_1718Heavy metal translocating P-type ATPase. (659 aa)
nuoANADH:ubiquinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (118 aa)
nuoBNADH dehydrogenase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (170 aa)
nuoCNADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (252 aa)
LIP_1823NADH:ubiquinone oxidoreductase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (197 aa)
LIP_1825NADH-quinone oxidoreductase subunit L. (641 aa)
LIP_1826NADH:ubiquinone oxidoreductase subunit M. (494 aa)
nuoNNADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (475 aa)
LIP_1832Cation:proton antiporter. (131 aa)
LIP_1833Monovalent cation/H+ antiporter subunit F. (93 aa)
LIP_1835Na+/H+ antiporter. (513 aa)
LIP_1836Monovalent cation/H+ antiporter subunit C. (120 aa)
LIP_1837Cation:proton antiporter. (200 aa)
LIP_1838Cation:proton antiporter. (783 aa)
LIP_1929Amino acid transporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (416 aa)
rbsA-2D-ribose transporter ATP binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (506 aa)
rbsA-3Sugar ABC transporter ATPase; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (512 aa)
LIP_1960Cytochrome C oxidase subunit II. (160 aa)
LIP_1961Cytochrome C oxidase subunit I. (552 aa)
LIP_1974ABC transporter permease. (284 aa)
LIP_1975ABC transporter; Belongs to the ABC transporter superfamily. (349 aa)
LIP_1978Sodium:proton antiporter. (598 aa)
LIP_1981L-cystine transporter tcyP; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (463 aa)
LIP_1991ABC transporter permease. (295 aa)
LIP_1995Sugar ABC transporter permease. (310 aa)
LIP_2009Sugar ABC transporter permease. (285 aa)
LIP_2036Sugar ABC transporter permease. (290 aa)
LIP_2065ABC transporter permease. (305 aa)
LIP_2072ABC transporter permease. (310 aa)
LIP_2089Spermidine/putrescine ABC transporter permease. (301 aa)
LIP_2090Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily. (360 aa)
LIP_2116D-ribose transporter ATP binding protein. (498 aa)
LIP_2122ABC transporter permease. (311 aa)
LIP_2145Sugar-binding protein. (308 aa)
LIP_2183ABC transporter permease. (294 aa)
LIP_2196Sugar ABC transporter permease. (309 aa)
LIP_2203Hypothetical protein. (294 aa)
LIP_2216Carbohydrate ABC transporter membrane protein 1, CUT1 family. (301 aa)
LIP_2237D-ribose transporter ATP binding protein. (501 aa)
LIP_2258Hypothetical protein. (109 aa)
LIP_2261Hypothetical protein. (269 aa)
LIP_2286Transporter integral membrane protein. (291 aa)
LIP_2331ABC transporter permease. (304 aa)
LIP_2341Sugar ABC transporter permease. (287 aa)
LIP_2443ABC transporter permease. (316 aa)
LIP_2451ABC transporter permease. (311 aa)
LIP_2454ABC transporter permease. (319 aa)
LIP_2465ABC transporter permease. (321 aa)
secFPreprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (301 aa)
secDPreprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (403 aa)
LIP_2698Trk system potassium transporter TrkH. (486 aa)
LIP_2713Sulfate permease. (311 aa)
LIP_2753Nitric oxide reductase. (788 aa)
LIP_2764ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (395 aa)
LIP_2880Transporter. (453 aa)
LIP_2911Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (370 aa)
LIP_2923Pantothenate permease; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (491 aa)
secAPreprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (934 aa)
LIP_2995ATPase P. (761 aa)
LIP_3003Multidrug ABC transporter ATPase. (583 aa)
LIP_3004Multidrug ABC transporter ATPase. (632 aa)
pstBPhosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (251 aa)
LIP_3038Phosphate ABC transporter permease. (280 aa)
LIP_3039Phosphate transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (321 aa)
LIP_3059ABC transporter ATP-binding protein. (580 aa)
LIP_3066ABC transporter. (242 aa)
atpDF0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (478 aa)
atpAF0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (504 aa)
nuoN-2NADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (507 aa)
LIP_3108NADH:ubiquinone oxidoreductase subunit L. (632 aa)
LIP_3110NADH dehydrogenase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (181 aa)
LIP_3114NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (426 aa)
nuoC-2NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (182 aa)
nuoB-2NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (161 aa)
LIP_3119NADH dehydrogenase subunit 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. (120 aa)
pstB-2Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (262 aa)
LIP_3225Hypothetical protein. (234 aa)
LIP_3317Carbon starvation protein CstA. (586 aa)
LIP_3345HAD family hydrolase. (681 aa)
LIP_3351Hypothetical protein. (431 aa)
LIP_3363ABC transporter; Belongs to the ABC transporter superfamily. (373 aa)
LIP_3368ATPase P. (721 aa)
LIP_3384ATPase. (631 aa)
metNMethionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (344 aa)
LIP_3421NADH dehydrogenase. (441 aa)
LIP_3450Sodium:proton antiporter. (516 aa)
LIP_3461Hypothetical protein. (725 aa)
LIP_3469ATPase P. (91 aa)
LIP_3470ATPase. (899 aa)
cobDCobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (332 aa)
cobQCobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (504 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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