STRINGSTRING
LIP_1109 LIP_1109 LIP_2954 LIP_2954 LIP_0674 LIP_0674 LIP_0520 LIP_0520 LIP_0043 LIP_0043 LIP_0040 LIP_0040
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_1109Mechanosensitive ion channel protein MscS. (329 aa)
LIP_2954Hypothetical protein; Belongs to the bacterial solute-binding protein 3 family. (251 aa)
LIP_0674Amino acid ABC transporter substrate-binding protein. (341 aa)
LIP_0520Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (248 aa)
LIP_0043Chloride channel protein. (576 aa)
LIP_0040Chloride channel protein. (613 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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