(47 nodes) Outer membrane-bounded periplasmic space network (Limnochorda pilosa)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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experimentally determined

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Your Input:
	LIP_1843	ABC transporter substrate-binding protein. (576 aa)
	LIP_0096	Hypothetical protein. (258 aa)
	LIP_0265	TRAP dicarboxylate transporter subunit DctP. (354 aa)
	LIP_0296	DMSO reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (879 aa)
	LIP_0374	DMSO reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (867 aa)
	LIP_0378	DMSO reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (852 aa)
	LIP_0527	Peptide ABC transporter substrate-binding protein. (546 aa)
	LIP_0531	ABC transporter substrate-binding protein. (506 aa)
	LIP_0570	Hypothetical protein. (284 aa)
	LIP_0573	Hypothetical protein. (426 aa)
	LIP_0607	ABC transporter substrate-binding protein. (504 aa)
	LIP_0635	Peptide ABC transporter substrate-binding protein. (540 aa)
	LIP_0674	Amino acid ABC transporter substrate-binding protein. (341 aa)
	LIP_0723	ABC transporter substrate-binding protein. (628 aa)
	LIP_0801	C4-dicarboxylate ABC transporter substrate-binding protein. (339 aa)
	LIP_0832	Formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (661 aa)
	LIP_0866	Ferroxidase. (329 aa)
	LIP_0868	Multicopper oxidase. (343 aa)
	LIP_0940	ABC transporter substrate-binding protein. (568 aa)
	LIP_1012	ABC transporter substrate-binding protein. (351 aa)
	LIP_1018	C4-dicarboxylate ABC transporter. (332 aa)
	LIP_1049	ABC transporter substrate-binding protein. (524 aa)
	LIP_1128	Methanol dehydrogenase. (605 aa)
	LIP_1347	Transcriptional initiation protein Tat; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (795 aa)
	LIP_1421	Peptide ABC transporter substrate-binding protein. (506 aa)
	LIP_1492	Molybdenum ABC transporter substrate-binding protein. (286 aa)
	LIP_1503	Peptide ABC transporter substrate-binding protein. (559 aa)
	LIP_1722	Peptide ABC transporter substrate-binding protein. (515 aa)
	LIP_3346	Nitrite reductase. (353 aa)
	LIP_3365	Iron ABC transporter substrate-binding protein. (341 aa)
	LIP_3410	Formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (861 aa)
	LIP_3411	Hypothetical protein. (153 aa)
	LIP_2024	Peptide ABC transporter substrate-binding protein. (531 aa)
	LIP_2042	2', 3'-cyclic nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. (680 aa)
	LIP_2081	C4-dicarboxylate ABC transporter substrate-binding protein. (326 aa)
	LIP_2094	C4-dicarboxylate ABC transporter substrate-binding protein. (359 aa)
	LIP_2102	C4-dicarboxylate ABC transporter substrate-binding protein. (329 aa)
	LIP_2134	Hypothetical protein. (515 aa)
	LIP_2138	Peptide ABC transporter substrate-binding protein. (489 aa)
	LIP_2157	Oligopeptide-binding protein AppA. (534 aa)
	LIP_2230	Peptide ABC transporter substrate-binding protein. (530 aa)
	LIP_2348	Hypothetical protein. (516 aa)
	LIP_2461	ABC transporter substrate-binding protein. (592 aa)
	LIP_2766	Hypothetical protein. (362 aa)
	LIP_2932	Peptidase S41; Belongs to the peptidase S41A family. (426 aa)
	LIP_2937	5'-nucleotidase; Belongs to the 5'-nucleotidase family. (497 aa)
	flgI	Flagellar basal body P-ring biosynthesis protein FlgA; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (375 aa)

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

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node1	node2	node1 annotation	node2 annotation	score
LIP_0374	LIP_0378	DMSO reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	DMSO reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.922
LIP_0378	LIP_0374	DMSO reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	DMSO reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.922
LIP_0527	LIP_0531	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.528
LIP_0527	LIP_0607	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.503
LIP_0527	LIP_0635	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.536
LIP_0527	LIP_1049	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.513
LIP_0527	LIP_1421	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.520
LIP_0527	LIP_1503	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.500
LIP_0527	LIP_1722	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.534
LIP_0527	LIP_1843	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.446
LIP_0527	LIP_2024	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.517
LIP_0527	LIP_2134	Peptide ABC transporter substrate-binding protein.	Hypothetical protein.	0.530
LIP_0527	LIP_2138	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.531
LIP_0527	LIP_2157	Peptide ABC transporter substrate-binding protein.	Oligopeptide-binding protein AppA.	0.511
LIP_0527	LIP_2230	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.532
LIP_0527	LIP_2348	Peptide ABC transporter substrate-binding protein.	Hypothetical protein.	0.518
LIP_0527	LIP_2461	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.435
LIP_0531	LIP_0527	ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.528
LIP_0531	LIP_0607	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.527
LIP_0531	LIP_0635	ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.541