STRINGSTRING
LIP_1505 LIP_1505 LIP_0525 LIP_0525 LIP_1047 LIP_1047 LIP_1423 LIP_1423 LIP_1724 LIP_1724 LIP_1841 LIP_1841 LIP_2026 LIP_2026 LIP_2132 LIP_2132 LIP_2156 LIP_2156 LIP_2459 LIP_2459
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_1505Peptide ABC transporter permease. (306 aa)
LIP_0525Peptide ABC transporter permease. (301 aa)
LIP_1047Peptide ABC transporter permease. (309 aa)
LIP_1423Peptide ABC transporter permease. (312 aa)
LIP_1724Peptide ABC transporter permease. (290 aa)
LIP_1841ABC transporter permease. (351 aa)
LIP_2026Peptide ABC transporter permease. (301 aa)
LIP_2132Peptide ABC transporter permease. (304 aa)
LIP_2156Peptide ABC transporter permease. (302 aa)
LIP_2459Peptide ABC transporter permease. (371 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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