(19 nodes) Solute-binding protein family 5 network (Limnochorda pilosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIP_0527	Peptide ABC transporter substrate-binding protein. (546 aa)
	LIP_0531	ABC transporter substrate-binding protein. (506 aa)
	LIP_0575	Hypothetical protein. (822 aa)
	LIP_0607	ABC transporter substrate-binding protein. (504 aa)
	LIP_0635	Peptide ABC transporter substrate-binding protein. (540 aa)
	LIP_0723	ABC transporter substrate-binding protein. (628 aa)
	LIP_0940	ABC transporter substrate-binding protein. (568 aa)
	LIP_1049	ABC transporter substrate-binding protein. (524 aa)
	LIP_1421	Peptide ABC transporter substrate-binding protein. (506 aa)
	LIP_1503	Peptide ABC transporter substrate-binding protein. (559 aa)
	LIP_1722	Peptide ABC transporter substrate-binding protein. (515 aa)
	LIP_1843	ABC transporter substrate-binding protein. (576 aa)
	LIP_2024	Peptide ABC transporter substrate-binding protein. (531 aa)
	LIP_2134	Hypothetical protein. (515 aa)
	LIP_2138	Peptide ABC transporter substrate-binding protein. (489 aa)
	LIP_2157	Oligopeptide-binding protein AppA. (534 aa)
	LIP_2230	Peptide ABC transporter substrate-binding protein. (530 aa)
	LIP_2348	Hypothetical protein. (516 aa)
	LIP_2461	ABC transporter substrate-binding protein. (592 aa)

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

page 1 of 14

Server load: low (20%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Neighborhood

Databases

Cooccurrence

Experiments

Fusion

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
LIP_0527	LIP_0531	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.528
LIP_0527	LIP_0607	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.503
LIP_0527	LIP_0635	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.536
LIP_0527	LIP_1049	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.513
LIP_0527	LIP_1421	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.520
LIP_0527	LIP_1503	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.500
LIP_0527	LIP_1722	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.534
LIP_0527	LIP_1843	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.446
LIP_0527	LIP_2024	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.517
LIP_0527	LIP_2134	Peptide ABC transporter substrate-binding protein.	Hypothetical protein.	0.530
LIP_0527	LIP_2138	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.531
LIP_0527	LIP_2157	Peptide ABC transporter substrate-binding protein.	Oligopeptide-binding protein AppA.	0.511
LIP_0527	LIP_2230	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.532
LIP_0527	LIP_2348	Peptide ABC transporter substrate-binding protein.	Hypothetical protein.	0.518
LIP_0527	LIP_2461	Peptide ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.435
LIP_0531	LIP_0527	ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.528
LIP_0531	LIP_0607	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.527
LIP_0531	LIP_0635	ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.541
LIP_0531	LIP_0723	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.471
LIP_0531	LIP_0940	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.435