STRINGSTRING
LIP_1380 LIP_1380 LIP_0040 LIP_0040 LIP_0043 LIP_0043 LIP_0071 LIP_0071 LIP_0776 LIP_0776 LIP_1112 LIP_1112 LIP_3125 LIP_3125 LIP_3126 LIP_3126
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_1380Hypothetical protein. (270 aa)
LIP_0040Chloride channel protein. (613 aa)
LIP_0043Chloride channel protein. (576 aa)
LIP_0071Hypothetical protein. (503 aa)
LIP_0776Magnesium transporter; Acts as a magnesium transporter. (450 aa)
LIP_1112Glycine/betaine ABC transporter ATP-binding protein. (412 aa)
LIP_3125Peptidase; Belongs to the peptidase M50B family. (374 aa)
LIP_3126Hypothetical protein. (951 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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