STRINGSTRING
LIP_1964 LIP_1964 LIP_3502 LIP_3502 LIP_3436 LIP_3436 LIP_3387 LIP_3387 LIP_3312 LIP_3312 LIP_3299 LIP_3299 tuf-2 tuf-2 secE secE rpoB rpoB rpoC rpoC tuf tuf secY secY rpoA rpoA LIP_3221 LIP_3221 LIP_3220 LIP_3220 LIP_3157 LIP_3157 LIP_3137 LIP_3137 LIP_3059 LIP_3059 LIP_3040 LIP_3040 LIP_3004 LIP_3004 LIP_3003 LIP_3003 LIP_2999 LIP_2999 secA secA LIP_2864 LIP_2864 LIP_2798 LIP_2798 LIP_2742 LIP_2742 LIP_2702 LIP_2702 secD secD secF secF LIP_2541 LIP_2541 LIP_2537 LIP_2537 LIP_2534 LIP_2534 LIP_2461 LIP_2461 LIP_2460 LIP_2460 LIP_2459 LIP_2459 LIP_2430 LIP_2430 LIP_2416 LIP_2416 LIP_2400 LIP_2400 LIP_2371 LIP_2371 LIP_2348 LIP_2348 LIP_2347 LIP_2347 LIP_2346 LIP_2346 LIP_2323 LIP_2323 LIP_2230 LIP_2230 LIP_2229 LIP_2229 LIP_2228 LIP_2228 LIP_2157 LIP_2157 LIP_2156 LIP_2156 LIP_2155 LIP_2155 LIP_2138 LIP_2138 LIP_2137 LIP_2137 LIP_2136 LIP_2136 LIP_2134 LIP_2134 LIP_2133 LIP_2133 LIP_2132 LIP_2132 LIP_2110 LIP_2110 LIP_2059 LIP_2059 LIP_2026 LIP_2026 LIP_2025 LIP_2025 LIP_2024 LIP_2024 LIP_1963 LIP_1963 LIP_1843 LIP_1843 LIP_1842 LIP_1842 LIP_1841 LIP_1841 LIP_1724 LIP_1724 LIP_1723 LIP_1723 LIP_1722 LIP_1722 LIP_1552 LIP_1552 LIP_1549 LIP_1549 LIP_1505 LIP_1505 LIP_1504 LIP_1504 LIP_1503 LIP_1503 LIP_1472 LIP_1472 LIP_1423 LIP_1423 LIP_1422 LIP_1422 LIP_1421 LIP_1421 LIP_1370 LIP_1370 LIP_1290 LIP_1290 LIP_1065 LIP_1065 LIP_1049 LIP_1049 LIP_1048 LIP_1048 LIP_1047 LIP_1047 LIP_0942 LIP_0942 LIP_0941 LIP_0941 LIP_0940 LIP_0940 LIP_0888 LIP_0888 LIP_0862 LIP_0862 LIP_0856 LIP_0856 LIP_0848 LIP_0848 LIP_0825 LIP_0825 LIP_0789 LIP_0789 LIP_0733 LIP_0733 LIP_0731 LIP_0731 LIP_0723 LIP_0723 LIP_0722 LIP_0722 LIP_0721 LIP_0721 LIP_0713 LIP_0713 LIP_0699 LIP_0699 LIP_0689 LIP_0689 LIP_0685 LIP_0685 LIP_0670 LIP_0670 LIP_0635 LIP_0635 LIP_0634 LIP_0634 LIP_0633 LIP_0633 LIP_0624 LIP_0624 LIP_0607 LIP_0607 msrA msrA LIP_0589 LIP_0589 LIP_0577 LIP_0577 LIP_0576 LIP_0576 LIP_0531 LIP_0531 LIP_0530 LIP_0530 LIP_0529 LIP_0529 LIP_0527 LIP_0527 LIP_0526 LIP_0526 LIP_0525 LIP_0525 LIP_0504 LIP_0504 LIP_0486 LIP_0486 LIP_0367 LIP_0367 LIP_0364 LIP_0364 LIP_0362 LIP_0362 LIP_0360 LIP_0360 LIP_0355 LIP_0355 LIP_0339 LIP_0339 LIP_0200 LIP_0200 LIP_0144 LIP_0144 LIP_0118 LIP_0118 LIP_0064 LIP_0064
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LIP_1964Arabinose ABC transporter permease. (396 aa)
LIP_3502Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (218 aa)
LIP_3436Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (159 aa)
LIP_3387MFS transporter. (440 aa)
LIP_3312ferredoxin-NADP reductase. (336 aa)
LIP_32995-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (377 aa)
tuf-2Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (400 aa)
secEPreprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (68 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1234 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1254 aa)
tufElongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (400 aa)
secYPreprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (422 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (313 aa)
LIP_3221Peptide ABC transporter. (314 aa)
LIP_3220Peptide ABC transporter permease. (272 aa)
LIP_3157Nucleoside diphosphate kinase; Belongs to the NDK family. (132 aa)
LIP_3137MFS transporter. (432 aa)
LIP_3059ABC transporter ATP-binding protein. (580 aa)
LIP_3040Phosphate ABC transporter substrate-binding protein; Belongs to the PstS family. (348 aa)
LIP_3004Multidrug ABC transporter ATPase. (632 aa)
LIP_3003Multidrug ABC transporter ATPase. (583 aa)
LIP_2999Hydrolase; Belongs to the UPF0173 family. (238 aa)
secAPreprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (934 aa)
LIP_2864Alcohol dehydrogenase. (366 aa)
LIP_2798MFS transporter permease; Belongs to the major facilitator superfamily. (498 aa)
LIP_2742Thiol-disulfide oxidoreductase. (174 aa)
LIP_2702AsnC family transcriptional regulator. (168 aa)
secDPreprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (403 aa)
secFPreprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (301 aa)
LIP_2541Thioredoxin reductase. (319 aa)
LIP_2537Thioredoxin; Belongs to the thioredoxin family. (110 aa)
LIP_2534Hypothetical protein. (425 aa)
LIP_2461ABC transporter substrate-binding protein. (592 aa)
LIP_2460ABC transporter permease. (323 aa)
LIP_2459Peptide ABC transporter permease. (371 aa)
LIP_2430Hypothetical protein. (447 aa)
LIP_2416MFS transporter. (434 aa)
LIP_2400Thioredoxin reductase. (361 aa)
LIP_2371Hypothetical protein. (2016 aa)
LIP_2348Hypothetical protein. (516 aa)
LIP_2347Peptide ABC transporter. (312 aa)
LIP_2346Glutathione ABC transporter permease GsiD. (282 aa)
LIP_2323Alcohol dehydrogenase. (367 aa)
LIP_2230Peptide ABC transporter substrate-binding protein. (530 aa)
LIP_2229Glutathione ABC transporter permease. (306 aa)
LIP_2228Diguanylate cyclase. (296 aa)
LIP_2157Oligopeptide-binding protein AppA. (534 aa)
LIP_2156Peptide ABC transporter permease. (302 aa)
LIP_2155Peptide ABC transporter permease. (316 aa)
LIP_2138Peptide ABC transporter substrate-binding protein. (489 aa)
LIP_2137Peptide ABC transporter permease. (346 aa)
LIP_2136Hypothetical protein. (343 aa)
LIP_2134Hypothetical protein. (515 aa)
LIP_2133Glutathione ABC transporter permease. (315 aa)
LIP_2132Peptide ABC transporter permease. (304 aa)
LIP_2110Luciferase. (348 aa)
LIP_2059MFS transporter. (443 aa)
LIP_2026Peptide ABC transporter permease. (301 aa)
LIP_2025Peptide ABC transporter permease. (314 aa)
LIP_2024Peptide ABC transporter substrate-binding protein. (531 aa)
LIP_1963Hypothetical protein. (424 aa)
LIP_1843ABC transporter substrate-binding protein. (576 aa)
LIP_1842ABC transporter substrate-binding protein. (323 aa)
LIP_1841ABC transporter permease. (351 aa)
LIP_1724Peptide ABC transporter permease. (290 aa)
LIP_1723Peptide ABC transporter permease. (342 aa)
LIP_1722Peptide ABC transporter substrate-binding protein. (515 aa)
LIP_1552Hypothetical protein. (60 aa)
LIP_1549Major facilitator superfamily protein. (388 aa)
LIP_1505Peptide ABC transporter permease. (306 aa)
LIP_1504Glutathione ABC transporter permease. (308 aa)
LIP_1503Peptide ABC transporter substrate-binding protein. (559 aa)
LIP_1472MFS transporter. (424 aa)
LIP_1423Peptide ABC transporter permease. (312 aa)
LIP_1422Peptide ABC transporter permease. (322 aa)
LIP_1421Peptide ABC transporter substrate-binding protein. (506 aa)
LIP_1370Thioredoxin peroxidase. (184 aa)
LIP_1290Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (73 aa)
LIP_1065MFS transporter. (417 aa)
LIP_1049ABC transporter substrate-binding protein. (524 aa)
LIP_1048Peptide ABC transporter permease. (351 aa)
LIP_1047Peptide ABC transporter permease. (309 aa)
LIP_0942ABC transporter permease. (278 aa)
LIP_0941Peptide ABC transporter permease. (353 aa)
LIP_0940ABC transporter substrate-binding protein. (568 aa)
LIP_0888Hypothetical protein. (189 aa)
LIP_0862Hypothetical protein. (380 aa)
LIP_0856Hypothetical protein. (449 aa)
LIP_0848Hypothetical protein. (656 aa)
LIP_0825Branched-chain alpha-keto acid dehydrogenase subunit E2. (463 aa)
LIP_0789Hypothetical protein. (484 aa)
LIP_0733Peroxiredoxin. (153 aa)
LIP_0731Alkyl hydroperoxide reductase. (84 aa)
LIP_0723ABC transporter substrate-binding protein. (628 aa)
LIP_0722ABC transporter permease. (392 aa)
LIP_0721ABC transporter permease. (309 aa)
LIP_0713Hypothetical protein. (457 aa)
LIP_0699MFS transporter. (432 aa)
LIP_0689Hypothetical protein. (406 aa)
LIP_0685Hypothetical protein. (175 aa)
LIP_0670Multidrug MFS transporter; Belongs to the major facilitator superfamily. (559 aa)
LIP_0635Peptide ABC transporter substrate-binding protein. (540 aa)
LIP_0634Peptide ABC transporter permease. (318 aa)
LIP_0633Peptide ABC transporter permease. (272 aa)
LIP_0624Hypothetical protein. (193 aa)
LIP_0607ABC transporter substrate-binding protein. (504 aa)
msrAMethionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (197 aa)
LIP_0589MFS transporter. (420 aa)
LIP_0577Hypothetical protein. (483 aa)
LIP_0576Peptide ABC transporter permease. (351 aa)
LIP_0531ABC transporter substrate-binding protein. (506 aa)
LIP_0530Peptide ABC transporter. (324 aa)
LIP_0529Glutathione ABC transporter permease GsiD. (296 aa)
LIP_0527Peptide ABC transporter substrate-binding protein. (546 aa)
LIP_0526Glutathione ABC transporter permease. (306 aa)
LIP_0525Peptide ABC transporter permease. (301 aa)
LIP_0504FAD-dependent pyridine nucleotide-disulfide oxidoreductase. (189 aa)
LIP_0486Hypothetical protein. (433 aa)
LIP_0367Hypothetical protein. (348 aa)
LIP_0364Hypothetical protein. (443 aa)
LIP_0362Thiol-disulfide oxidoreductase. (409 aa)
LIP_0360Thiol-disulfide oxidoreductase. (398 aa)
LIP_0355Thiol-disulfide oxidoreductase. (404 aa)
LIP_0339Metal-dependent hydrolase. (248 aa)
LIP_0200Branched-chain alpha-keto acid dehydrogenase subunit E2. (504 aa)
LIP_0144Hypothetical protein. (260 aa)
LIP_0118Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (204 aa)
LIP_0064Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (162 aa)
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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