STRINGSTRING
fixA fixA fixB fixB fixC fixC fixX fixX yaaU yaaU ydiQ ydiQ ydiR ydiR ydiS ydiS ydiT ydiT ydiD ydiD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fixAProbable flavoprotein subunit, carnitine metabolism; Required for anaerobic carnitine reduction. May bring reductant to CaiA (By similarity). (268 aa)
fixBProbable flavoprotein subunit, carnitine metabolism; Required for anaerobic carnitine reduction. May bring reductant to CaiA. (313 aa)
fixCFlavoprotein; Could be part of an electron transfer system required for anaerobic carnitine reduction; Belongs to the ETF-QO/FixC family. (428 aa)
fixXPutative ferredoxin; Could be part of an electron transfer system required for anaerobic carnitine reduction. Could be a 3Fe-4S cluster-containing protein (By similarity). (95 aa)
yaaUPutative transport protein; Residues 1 to 443 of 443 are 99.77 pct identical to residues 1 to 443 of 443 from Escherichia coli K-12 Strain MG1655: B0045. (443 aa)
ydiQPutative transport protein; Residues 1 to 254 of 254 are 97.63 pct identical to residues 1 to 254 of 254 from Escherichia coli K-12 Strain MG1655: B1697. (254 aa)
ydiRPutative flavoprotein; Residues 1 to 312 of 312 are 99.03 pct identical to residues 1 to 312 of 312 from Escherichia coli K-12 Strain MG1655: B1698. (312 aa)
ydiSFlavoprotein; Part of an electron transfer system. Belongs to the ETF-QO/FixC family. (429 aa)
ydiTOrf, hypothetical protein; Could be a 3Fe-4S cluster-containing protein. (97 aa)
ydiDPutative ligase/synthetase; Residues 1 to 566 of 566 are 98.76 pct identical to residues 1 to 566 of 566 from Escherichia coli K-12 Strain MG1655: B1701. (566 aa)
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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