(6 nodes) Mixed, incl. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding ..., and Bacterial transcriptional regulator network (Escherichia coli O157H7 EDL933)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	ydfH	Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540. (228 aa)
	mcbR	Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.58 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B1450. (240 aa)
	kdgR	Putative regulator; Residues 1 to 263 of 263 are 99.23 pct identical to residues 1 to 263 of 263 from Escherichia coli K-12 Strain MG1655: B1827. (263 aa)
	yebQ	Putative transport protein; Residues 1 to 494 of 494 are 99.39 pct identical to residues 1 to 494 of 494 from Escherichia coli K-12 Strain MG1655: B1828. (494 aa)
	yieO	Putative transport protein; Residues 1 to 475 of 475 are 99.57 pct identical to residues 1 to 475 of 475 from Escherichia coli K-12 Strain MG1655: B3754; Belongs to the major facilitator superfamily. (475 aa)
	yieP	Hypothetical protein; Residues 49 to 230 of 230 are 98.90 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B3755. (230 aa)

Your Current Organism:

Escherichia coli O157H7 EDL933

NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
kdgR	ydfH	Z2874	Z2157	Putative regulator; Residues 1 to 263 of 263 are 99.23 pct identical to residues 1 to 263 of 263 from Escherichia coli K-12 Strain MG1655: B1827.	Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540.	0.435
kdgR	yebQ	Z2874	Z2875	Putative regulator; Residues 1 to 263 of 263 are 99.23 pct identical to residues 1 to 263 of 263 from Escherichia coli K-12 Strain MG1655: B1827.	Putative transport protein; Residues 1 to 494 of 494 are 99.39 pct identical to residues 1 to 494 of 494 from Escherichia coli K-12 Strain MG1655: B1828.	0.556
mcbR	ydfH	Z2269	Z2157	Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.58 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B1450.	Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540.	0.741
mcbR	yieP	Z2269	Z5258	Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.58 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B1450.	Hypothetical protein; Residues 49 to 230 of 230 are 98.90 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B3755.	0.669
ydfH	kdgR	Z2157	Z2874	Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540.	Putative regulator; Residues 1 to 263 of 263 are 99.23 pct identical to residues 1 to 263 of 263 from Escherichia coli K-12 Strain MG1655: B1827.	0.435
ydfH	mcbR	Z2157	Z2269	Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540.	Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.58 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B1450.	0.741
ydfH	yieP	Z2157	Z5258	Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540.	Hypothetical protein; Residues 49 to 230 of 230 are 98.90 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B3755.	0.607
yebQ	kdgR	Z2875	Z2874	Putative transport protein; Residues 1 to 494 of 494 are 99.39 pct identical to residues 1 to 494 of 494 from Escherichia coli K-12 Strain MG1655: B1828.	Putative regulator; Residues 1 to 263 of 263 are 99.23 pct identical to residues 1 to 263 of 263 from Escherichia coli K-12 Strain MG1655: B1827.	0.556
yieO	yieP	Z5255	Z5258	Putative transport protein; Residues 1 to 475 of 475 are 99.57 pct identical to residues 1 to 475 of 475 from Escherichia coli K-12 Strain MG1655: B3754; Belongs to the major facilitator superfamily.	Hypothetical protein; Residues 49 to 230 of 230 are 98.90 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B3755.	0.747
yieP	mcbR	Z5258	Z2269	Hypothetical protein; Residues 49 to 230 of 230 are 98.90 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B3755.	Orf, hypothetical protein; Residues 1 to 240 of 240 are 99.58 pct identical to residues 1 to 240 of 240 from Escherichia coli K-12 Strain MG1655: B1450.	0.669
yieP	ydfH	Z5258	Z2157	Hypothetical protein; Residues 49 to 230 of 230 are 98.90 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B3755.	Orf, hypothetical protein; Residues 1 to 228 of 228 are 100.00 pct identical to residues 1 to 228 of 228 from Escherichia coli K-12 Strain MG1655: B1540.	0.607
yieP	yieO	Z5258	Z5255	Hypothetical protein; Residues 49 to 230 of 230 are 98.90 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B3755.	Putative transport protein; Residues 1 to 475 of 475 are 99.57 pct identical to residues 1 to 475 of 475 from Escherichia coli K-12 Strain MG1655: B3754; Belongs to the major facilitator superfamily.	0.747

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