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| | glpC | Sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit; Electron transfer protein; may also function as the membrane anchor for the GlpAB dimer. (396 aa) |
| | hcaC | Ferredoxin subunit of phenylpropionate dioxygenase; Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively. This protein seems to be a 2Fe-2S ferredoxin (By similarity). (106 aa) |
| | yfhL | Orf, hypothetical protein; Residues 1 to 86 of 86 are 98.83 pct identical to residues 1 to 86 of 86 from Escherichia coli K-12 Strain MG1655: B2562. (86 aa) |
| | hydN | Involved in electron transport from formate to hydrogen, Fe-S centers; Electron transport from formate to hydrogen. (175 aa) |
| | hycG | Hydrogenase activity; Residues 1 to 255 of 255 are 99.60 pct identical to residues 1 to 255 of 255 from Escherichia coli K-12 Strain MG1655: B2719. (255 aa) |
| | hycF | Probable iron-sulfur protein of hydrogenase 3 (part of FHL complex); Residues 1 to 180 of 180 are 99.44 pct identical to residues 1 to 180 of 180 from Escherichia coli K-12 Strain MG1655: B2720. (180 aa) |
| | hycB | 4Fe-4S dicluster domain-containing protein; Residues 1 to 203 of 203 are 99.50 pct identical to residues 1 to 203 of 203 from Escherichia coli K-12 Strain MG1655: B2724. (203 aa) |
| | cysI | Sulfite reductase, alpha subunit; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (570 aa) |
| | ygcO | Hypothetical protein; Could be a 3Fe-4S cluster-containing protein. (98 aa) |
| | ygcF | Orf, hypothetical protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (223 aa) |
| | ygcA | Putative enzyme; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (433 aa) |
| | sdaB | L-serine dehydratase (deaminase), L-SD2; Residues 1 to 455 of 455 are 99.56 pct identical to residues 1 to 455 of 455 from Escherichia coli K-12 Strain MG1655: B2797; Belongs to the iron-sulfur dependent L-serine dehydratase family. (455 aa) |
| | xdhC | Putative dehydrogenase; Iron-sulfur subunit of the xanthine dehydrogenase complex. (159 aa) |
| | ygfK | Putative oxidoreductase, Fe-S subunit; Could be an iron-sulfur flavoprotein with NADPH:O(2) oxidoreductase activity. (1032 aa) |
| | xdhD | Putative dehydrogenase; Probably has no xanthine dehydrogenase activity; however deletion results in increased adenine sensitivity, suggesting that this protein contributes to the conversion of adenine to guanine nucleotides during purine salvage. (956 aa) |
| | ygfT | Putative oxidoreductase, Fe-S subunit; Residues 1 to 644 of 644 are 99.53 pct identical to residues 1 to 644 of 644 from Escherichia coli K-12 Strain MG1655: B2887. (644 aa) |
| | yggW | Putative oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (378 aa) |
| | mutY | Adenine glycosylase; Adenine glycosylase active on G-A mispairs. (350 aa) |
| | hybA | Hydrogenase-2 small subunit; Participates in the periplasmic electron-transferring activity of hydrogenase 2 during its catalytic turnover. (328 aa) |
| | hybO | Putative hydrogenase subunit; This is one of three E.coli hydrogenases synthesized in response to different physiological conditions. HYD2 is involved in hydrogen uptake. (372 aa) |
| | ygiQ | Hypothetical protein; Residues 327 to 739 of 739 are 99.75 pct identical to residues 1 to 413 of 413 from Escherichia coli K-12 Strain MG1655: B3015. (739 aa) |
| | ttdA | L-tartrate dehydratase, subunit A; Residues 1 to 303 of 303 are 99.00 pct identical to residues 1 to 303 of 303 from Escherichia coli K-12 Strain MG1655: B3061; Belongs to the class-I fumarase family. (303 aa) |
| | yiaI | Orf, hypothetical protein; Residues 1 to 157 of 157 are 98.72 pct identical to residues 1 to 157 of 157 from Escherichia coli K-12 Strain MG1655: B3573. (157 aa) |
| | ilvD | Dihydroxyacid dehydratase; Residues 21 to 616 of 616 are 98.17 pct identical to residues 4 to 605 of 605 from Escherichia coli K-12 Strain MG1655: B3771. (616 aa) |
| | aslB | Putative arylsulfatase regulator; Residues 1 to 411 of 411 are 97.81 pct identical to residues 1 to 411 of 411 from Escherichia coli K-12 Strain MG1655: B3800. (411 aa) |
| | hemN | O2-independent coproporphyrinogen III oxidase; Residues 1 to 459 of 459 are 99.78 pct identical to residues 1 to 459 of 459 from Escherichia coli K-12 Strain MG1655: B3867; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (459 aa) |
| | fdoH | Formate dehydrogenase-O, iron-sulfur subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (300 aa) |
| | fdoG | Formate dehydrogenase-O, major subunit; Residues 1 to 1016 of 1016 are 99.51 pct identical to residues 1 to 1016 of 1016 from Escherichia coli K-12 Strain MG1655: B3894. (1016 aa) |
| | pflC | Probable pyruvate formate lyase activating enzyme 2; Residues 1 to 292 of 292 are 98.63 pct identical to residues 1 to 292 of 292 from Escherichia coli K-12 Strain MG1655: B3952. (292 aa) |
| | thiH | Thiamin biosynthesis, thiazole moiety; Residues 1 to 377 of 377 are 99.20 pct identical to residues 1 to 377 of 377 from Escherichia coli K-12 Strain MG1655: B3990. (377 aa) |
| | thiC | Thiamin biosynthesis, pyrimidine moiety; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (631 aa) |
| | soxR | Redox-sensing activator of soxS; Activates the transcription of the soxS gene which itself controls the superoxide response regulon. SoxR contains a 2Fe-2S iron- sulfur cluster that may act as a redox sensor system that recognizes superoxide. The variable redox state of the Fe-S cluster is employed in vivo to modulate the transcriptional activity of SoxR in response to specific types of oxidative stress. Upon reduction of 2Fe-2S cluster, SoxR reversibly loses its transcriptional activity, but retains its DNA binding affinity (By similarity). (154 aa) |
| | nrfC | Formate-dependent nitrite reductase; Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes. (223 aa) |
| | fdhF | Formate dehydrogenase; Residues 1 to 715 of 715 are 99.86 pct identical to residues 1 to 715 of 715 from Escherichia coli K-12 Strain MG1655: B4079; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (715 aa) |
| | phnJ | Phosphonate metabolism; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. (281 aa) |
| | fumB | Fumarase B= fumarate hydratase Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (548 aa) |
| | yjeK | Orf, hypothetical protein; Residues 1 to 342 of 342 are 97.07 pct identical to residues 1 to 342 of 342 from Escherichia coli K-12 Strain MG1655: B4146. (342 aa) |
| | frdB | Fumarate reductase, anaerobic, iron-sulfur protein subunit; Two distinct, membrane-bound, FAD-containing enzymes are responsible for the catalysis of fumarate and succinate interconversion; the fumarate reductase is used in anaerobic growth, and the succinate dehydrogenase is used in aerobic growth. Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (244 aa) |
| | yjeS | Orf, hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (379 aa) |
| | yjeB | Orf, hypothetical protein; Nitric oxide-sensitive repressor of genes involved in protecting the cell against nitrosative stress. May require iron for activity. (141 aa) |
| | nrdG | Anaerobic ribonucleotide reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. (154 aa) |
| | yjiL | Putative enzyme; Residues 1 to 255 of 255 are 97.64 pct identical to residues 3 to 257 of 257 from Escherichia coli K-12 Strain MG1655: B4334. (255 aa) |
| | fhuF | Orf, hypothetical protein; Residues 1 to 262 of 262 are 96.56 pct identical to residues 1 to 262 of 262 from Escherichia coli K-12 Strain MG1655: B4367. (262 aa) |
| | yjjW | Putative activating enzyme; Residues 1 to 287 of 287 are 98.60 pct identical to residues 1 to 287 of 287 from Escherichia coli K-12 Strain MG1655: B4379. (287 aa) |
| | Z6033 | Putative tail component of cryptic prophage CP-933P; Residues 1 to 232 of 232 are 95.25 pct identical to residues 1 to 232 of 232 from Genpept121: dbj|BAB19566.1| (AP000400) minor tail protein L [Escherichia coli O157:H7]. (232 aa) |
| | lytB | Control of stringent response; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. (316 aa) |
| | fixX | Putative ferredoxin; Could be part of an electron transfer system required for anaerobic carnitine reduction. Could be a 3Fe-4S cluster-containing protein (By similarity). (95 aa) |
| | leuC | 3-isopropylmalate isomerase (dehydratase) subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (466 aa) |
| | acnB | Aconitate hydrase B; Residues 1 to 865 of 865 are 99.88 pct identical to residues 1 to 865 of 865 from Escherichia coli K-12 Strain MG1655: B0118; Belongs to the aconitase/IPM isomerase family. (865 aa) |
| | yadR | Orf, hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. (114 aa) |
| | yagS | Orf, hypothetical protein; Oxidizes aldehydes to the corresponding carboxylic acids with a preference for aromatic aldehydes. It might play a role in the detoxification of aldehydes to avoid cell damage. (318 aa) |
| | yagT | Putative xanthine dehydrogenase; Oxidizes aldehydes to the corresponding carboxylic acids with a preference for aromatic aldehydes. It might play a role in the detoxification of aldehydes to avoid cell damage. (229 aa) |
| | ykgJ | Putative ferredoxin; Residues 1 to 109 of 109 are 100.00 pct identical to residues 1 to 109 of 109 from Escherichia coli K-12 Strain MG1655: B0288; To A.calcoaceticus putative ferredoxin. (109 aa) |
| | ykgF | Orf, hypothetical protein; Residues 1 to 475 of 475 are 99.57 pct identical to residues 1 to 475 of 475 from Escherichia coli K-12 Strain MG1655: B0307. (475 aa) |
| | prpD | Orf, hypothetical protein; Involved in the catabolism of short chain fatty acids (SCFA) via the tricarboxylic acid (TCA)(acetyl degradation route) and via the 2-methylcitrate cycle I (propionate degradation route). Catalyzes the dehydration of 2-methylcitrate (2-MC) to yield the cis isomer of 2- methyl-aconitate. Could also catalyze the dehydration of citrate and the hydration of cis-aconitate; Belongs to the PrpD family. (483 aa) |
| | lipA | Lipoate synthesis, sulfur insertion; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (321 aa) |
| | yleA | Orf, hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (474 aa) |
| | sdhB | Succinate dehydrogenase, iron sulfur protein; Residues 1 to 238 of 238 are 99.57 pct identical to residues 1 to 238 of 238 from Escherichia coli K-12 Strain MG1655: B0724; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (238 aa) |
| | fumA-2 | Putative fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (550 aa) |
| | nadA | Quinolinate synthetase, A protein; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily. (347 aa) |
| | ybhJ | Putative enzyme; Residues 1 to 761 of 761 are 99.21 pct identical to residues 1 to 761 of 761 from Escherichia coli K-12 Strain MG1655: B0771. (761 aa) |
| | Z0977 | Putative tail component of prophage CP-933K; Residues 1 to 232 of 232 are 92.67 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|215122|gb|AAA96550.1| (J02459) L (tail component;232) [bacteriophage lambda]. (232 aa) |
| | bioB | Biotin synthesis, sulfur insertion; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (346 aa) |
| | moaA | Molybdopterin biosynthesis, protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (329 aa) |
| | dinG | Putative ATP-dependent helicase; DNA-dependent ATPase and 5'-3' DNA helicase. (716 aa) |
| | ybiY | Putative pyruvate formate-lyase 2 activating enzyme; Residues 1 to 299 of 299 are 98.32 pct identical to residues 10 to 308 of 308 from Escherichia coli K-12 Strain MG1655: B0824. (299 aa) |
| | yliG | Orf, hypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (441 aa) |
| | ybjF | Putative enzyme; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. (375 aa) |
| | hcr | Putative enzyme; Residues 1 to 322 of 322 are 98.75 pct identical to residues 1 to 322 of 322 from Escherichia coli K-12 Strain MG1655: B0872. (322 aa) |
| | ybjW | Putative prismane; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (552 aa) |
| | dmsA | Anaerobic dimethyl sulfoxide reductase subunit A; Residues 1 to 785 of 785 are 99.74 pct identical to residues 1 to 785 of 785 from Escherichia coli K-12 Strain MG1655: B0894; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (785 aa) |
| | dmsB | Anaerobic dimethyl sulfoxide reductase subunit B; Residues 1 to 205 of 205 are 99.51 pct identical to residues 1 to 205 of 205 from Escherichia coli K-12 Strain MG1655: B0895. (205 aa) |
| | pflA | Pyruvate formate lyase activating enzyme 1; Activation of pyruvate formate-lyase 1 under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. (246 aa) |
| | ycbX | Orf, hypothetical protein; Residues 1 to 369 of 369 are 98.64 pct identical to residues 1 to 369 of 369 from Escherichia coli K-12 Strain MG1655: B0947. (369 aa) |
| | hyaA | Hydrogenase-1 small subunit; Residues 1 to 372 of 372 are 99.73 pct identical to residues 1 to 372 of 372 from Escherichia coli K-12 Strain MG1655: B0972. (372 aa) |
| | yccM | Orf, hypothetical protein; Residues 1 to 357 of 357 are 97.75 pct identical to residues 1 to 357 of 357 from Escherichia coli K-12 Strain MG1655: B0992. (357 aa) |
| | Z1815 | Putative tail component L homolog encoded by prophage CP-933N; Residues 1 to 232 of 232 are 76.72 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|215122|gb|AAA96550.1| (J02459) L (tail component;232) [bacteriophage lambda]. (232 aa) |
| | Z1914 | Putative minor tail fiber protein of prophage CP-933X; Residues 1 to 137 of 145 are 72.26 pct identical to residues 1 to 136 of 232 from GenPept 118 : gi|215122|gb|AAA96550.1| (J02459) L (tail component;232) [bacteriophage lambda]. (145 aa) |
| | narG | Nitrate reductase 1, alpha subunit; Residues 1 to 1247 of 1247 are 99.91 pct identical to residues 1 to 1247 of 1247 from Escherichia coli K-12 Strain MG1655: B1224; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1247 aa) |
| | Z2142 | Putative tail component of prophage CP-933O; Residues 1 to 232 of 232 are 76.72 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|215122|gb|AAA96550.1| (J02459) L (tail component;232) [bacteriophage lambda]. (232 aa) |
| | ydeP | Putative oxidoreductase, major subunit; Probably involved in acid resistance; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (759 aa) |
| | ydeM | Putative enzyme; Residues 1 to 390 of 390 are 99.23 pct identical to residues 1 to 390 of 390 from Escherichia coli K-12 Strain MG1655: B1497. (390 aa) |
| | fdnH | Formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (294 aa) |
| | fdnG | Formate dehydrogenase-N, nitrate-inducible, alpha subunit; Residues 1 to 1015 of 1015 are 99.70 pct identical to residues 1 to 1015 of 1015 from Escherichia coli K-12 Strain MG1655: B1474. (1015 aa) |
| | narZ | Cryptic nitrate reductase 2, alpha subunit; Residues 1 to 1246 of 1246 are 99.19 pct identical to residues 1 to 1246 of 1246 from Escherichia coli K-12 Strain MG1655: B1468; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1246 aa) |
| | ydbK | Putative oxidoreductase, Fe-S subunit; Residues 1 to 1174 of 1174 are 99.57 pct identical to residues 1 to 1174 of 1174 from Escherichia coli K-12 Strain MG1655: B1378. (1174 aa) |
| | Z2352 | Putative tail component of prophage CP-933R; Residues 1 to 232 of 232 are 76.29 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|215122|gb|AAA96550.1| (J02459) L (tail component;232) [bacteriophage lambda]. (232 aa) |
| | ydaO | Orf, hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. (311 aa) |
| | fnr | Transcriptional regulation of aerobic, anaerobic respiration, osmotic balance; Global transcription factor that controls the expression of over 100 target genes in response to anoxia. It facilitates the adaptation to anaerobic growth conditions by regulating the expression of gene products that are involved in anaerobic energy metabolism. When the terminal electron acceptor, O(2), is no longer available, it represses the synthesis of enzymes involved in aerobic respiration and increases the synthesis of enzymes required for anaerobic respiration (By similarity). (250 aa) |
| | acnA | Aconitate hydrase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (891 aa) |
| | ynfF_2 | Putative oxidoreductase, major subunit; Residues 1 to 808 of 808 are 98.51 pct identical to residues 1 to 808 of 808 from Escherichia coli K-12 Strain MG1655: B1587; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (808 aa) |
| | ynfF_3 | Putative oxidoreductase, major subunit; Residues 1 to 808 of 808 are 99.50 pct identical to residues 1 to 808 of 808 from Escherichia coli K-12 Strain MG1655: B1588; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (808 aa) |
| | ynfG_2 | Putative oxidoreductase, Fe-S subunit; Residues 1 to 205 of 205 are 100.00 pct identical to residues 1 to 205 of 205 from Escherichia coli K-12 Strain MG1655: B1589. (205 aa) |
| | fumA | Fumarase A = fumarate hydratase Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Functions as an aerobic enzyme in the direction of malate formation as part of the citric acid cycle. Accounts for about 80% of the fumarase activity when the bacteria grow aerobically. To a lesser extent, also displays D-tartrate dehydratase activity in vitro, but is not able to convert (R)-malate, L-tartrate or meso-tartrate. Can also catalyze the isomerization of enol- to keto-oxaloacetate. (548 aa) |
| | rsxB | Orf, hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (192 aa) |
| | rsxC | Putative membrane protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (740 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (211 aa) |
| | ydhD | Orf, hypothetical protein; Monothiol glutaredoxin involved in the biogenesis of iron- sulfur clusters. (115 aa) |
| | ydhX | Putative oxidoreductase, Fe-S subunit; Residues 1 to 239 of 239 are 99.16 pct identical to residues 1 to 239 of 239 from Escherichia coli K-12 Strain MG1655: B1671. (239 aa) |
| | ydhV | Orf, hypothetical protein; Residues 1 to 700 of 700 are 99.71 pct identical to residues 1 to 700 of 700 from Escherichia coli K-12 Strain MG1655: B1673. (700 aa) |
| | ydhY | Putative oxidoreductase, Fe-S subunit; Residues 1 to 208 of 208 are 100.00 pct identical to residues 1 to 208 of 208 from Escherichia coli K-12 Strain MG1655: B1674. (208 aa) |
| | ydiC | Orf, hypothetical protein; Residues 1 to 122 of 122 are 99.18 pct identical to residues 1 to 122 of 122 from Escherichia coli K-12 Strain MG1655: B1684; Belongs to the HesB/IscA family. (122 aa) |
| | ydiJ | Putative oxidase; Residues 1 to 1018 of 1018 are 99.60 pct identical to residues 1 to 1018 of 1018 from Escherichia coli K-12 Strain MG1655: B1687. (1018 aa) |
| | ydiT | Orf, hypothetical protein; Could be a 3Fe-4S cluster-containing protein. (97 aa) |
| | yeaW | Orf, hypothetical protein; Converts carnitine to trimethylamine and malic semialdehyde. (374 aa) |
| | yeaX | Putative diogenase beta subunit; Converts carnitine to trimethylamine and malic semialdehyde. (321 aa) |
| | sdaA | L-serine deaminase; Residues 1 to 454 of 454 are 99.77 pct identical to residues 1 to 454 of 454 from Escherichia coli K-12 Strain MG1655: B1814; Belongs to the iron-sulfur dependent L-serine dehydratase family. (454 aa) |
| | edd | 6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (603 aa) |
| | Z3082 | Putative tail fiber component L of prophage CP-933U; Residues 1 to 232 of 232 are 76.29 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|215122|gb|AAA96550.1| (J02459) L (tail component;232) [bacteriophage lambda]. (232 aa) |
| | mrp | Putative ATPase; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (379 aa) |
| | Z3315 | Putative tail component of prophage CP-933V; Residues 1 to 232 of 232 are 75.86 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|215122|gb|AAA96550.1| (J02459) L (tail component;232) [bacteriophage lambda]. (232 aa) |
| | preT | Putative oxidoreductase; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) (By similarity). (412 aa) |
| | yeiA | Putative oxidoreductase; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) (By similarity). (413 aa) |
| | yeiL | Putative transcriptional regulator; Transcription regulator involved in mid-term, stationary- phase viability under nitrogen starvation. Might control expression of the salvage pathways or in some other way repress the recycling of nucleobases to nucleic acids and enhance their use as general nitrogen sources during nitrogen-limited growth (By similarity). (219 aa) |
| | napH | Ferredoxin-type protein: electron transfer; Residues 1 to 287 of 287 are 99.65 pct identical to residues 1 to 287 of 287 from Escherichia coli K-12 Strain MG1655: B2204. (287 aa) |
| | napG | Ferredoxin-type protein: electron transfer; Residues 1 to 231 of 231 are 99.56 pct identical to residues 1 to 231 of 231 from Escherichia coli K-12 Strain MG1655: B2205. (231 aa) |
| | napA | Probable nitrate reductase 3; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (828 aa) |
| | napF | Ferredoxin-type protein: electron transfer; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (164 aa) |
| | yfaE | Orf, hypothetical protein; Residues 1 to 84 of 84 are 98.80 pct identical to residues 1 to 84 of 84 from Escherichia coli K-12 Strain MG1655: B2236. (84 aa) |
| | nuoI | NADH dehydrogenase I chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (180 aa) |
| | nuoG | NADH dehydrogenase I chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity). (910 aa) |
| | nuoF | NADH dehydrogenase I chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (445 aa) |
| | nuoE | NADH dehydrogenase I chain E; Residues 1 to 166 of 166 are 99.39 pct identical to residues 1 to 166 of 166 from Escherichia coli K-12 Strain MG1655: B2285. (166 aa) |
| | nuoB | NADH dehydrogenase I chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (220 aa) |
| | yffG | Putative oxidoreductase, Fe-S subunit; Residues 1 to 659 of 659 are 99.39 pct identical to residues 1 to 659 of 659 from Escherichia coli K-12 Strain MG1655: B2468. (659 aa) |
| | hyfA | Hydrogenase 4 Fe-S subunit; Residues 1 to 218 of 218 are 97.70 pct identical to residues 1 to 218 of 218 from Escherichia coli K-12 Strain MG1655: B2481. (218 aa) |
| | hyfH | Hydrogenase 4 Fe-S subunit; Residues 1 to 181 of 181 are 97.79 pct identical to residues 1 to 181 of 181 from Escherichia coli K-12 Strain MG1655: B2488. (181 aa) |
| | hyfI | Hydrogenase 4 Fe-S subunit; Residues 1 to 252 of 252 are 99.20 pct identical to residues 1 to 252 of 252 from Escherichia coli K-12 Strain MG1655: B2489. (252 aa) |
| | gcpE | Orf, hypothetical protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (372 aa) |
| | yfgB | Orf, hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (384 aa) |
| | Z3782 | Hypothetical protein; No significant matches. (192 aa) |
| | dmsB-2 | Putative dimethyl sulfoxide reductase subunit B; Residues 4 to 134 of 145 are 61.83 pct identical to residues 57 to 186 of 205 from GenPept 118 : gi|1787122|gb|AAC73981.1| (AE000191) anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]. (145 aa) |
| | ynfF_4 | Putative dimethyl sulfoxide reductase subunit A; Residues 25 to 792 of 793 are 43.59 pct identical to residues 3 to 784 of 785 from GenPept 118 : gi|1787121|gb|AAC73980.1| (AE000191) anaerobic dimethyl sulfoxide reductase subunit A [Escherichia coli]; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (793 aa) |
| | fdx | [2FE-2S] ferredoxin, electron carrer protein; Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Although the function of this ferredoxin is unknown it is probable that it has a role as a cellular electron transfer protein. Involved in the in vivo assembly of the Fe-S clusters in a wide variety of iron-sulfur proteins (By similarity). Belongs to the adrenodoxin/putidaredoxin family. (111 aa) |
| | yfhF | Putative regulator; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system TrxA/TrxB (By similarity). (107 aa) |
| | iscU | Orf, hypothetical protein; A scaffold on which IscS assembles Fe-S clusters. Subsequently gives the nascent cluster to other proteins. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters (Probable). (128 aa) |
| | yfhO | Putative aminotransferase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis (biotin, thiamine, molybdopterin). Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine, then delivers the sulfur to an acceptor protein such as CyaY, IscU, IscX, MoaD/MoeB, ThiI, or TusA. Transfers sulfur to acceptor proteins via a transpersulfidation reaction; the flexibility of the persulfide sulfur-carrying Cys-328 allows it to reach different partners docked on [...] (412 aa) |
| | iscR | Orf, hypothetical protein; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. (162 aa) |
| | hcaA1 | Large terminal subunit of phenylpropionate dioxygenase; Part of the multicomponent 3-phenylpropionate dioxygenase. Converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3- phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively (By similarity). (453 aa) |
| | tdcG_3 | Putative L-serine deaminase; Residues 3 to 455 of 456 are 73.28 pct identical to residues 1 to 453 of 454 from Escherichia coli K-12 Strain MG1655: B1814; Belongs to the iron-sulfur dependent L-serine dehydratase family. (456 aa) |
| | yhbU | Putative collagenase; Residues 1 to 331 of 331 are 99.69 pct identical to residues 1 to 331 of 331 from Escherichia coli K-12 Strain MG1655: B3158. (331 aa) |
| | yhbV | Orf, hypothetical protein; Residues 1 to 298 of 298 are 98.99 pct identical to residues 1 to 298 of 298 from Escherichia coli K-12 Strain MG1655: B3159. (298 aa) |
| | yhcC | Orf, hypothetical protein; Residues 1 to 309 of 309 are 100.00 pct identical to residues 1 to 309 of 309 from Escherichia coli K-12 Strain MG1655: B3211. (309 aa) |
| | gltB | Glutamate synthase, large subunit; Residues 1 to 1517 of 1517 are 99.53 pct identical to residues 1 to 1517 of 1517 from Escherichia coli K-12 Strain MG1655: B3212. (1517 aa) |
| | gltD | Glutamate synthase, small subunit; Residues 1 to 472 of 472 are 99.36 pct identical to residues 1 to 472 of 472 from Escherichia coli K-12 Strain MG1655: B3213. (472 aa) |
| | nirB | Nitrite reductase (NAD(P)H) subunit; Residues 1 to 847 of 847 are 99.76 pct identical to residues 1 to 847 of 847 from Escherichia coli K-12 Strain MG1655: B3365; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (847 aa) |
| | nirD | Nitrite reductase (NAD(P)H) subunit; Required for activity of the reductase; To B.subtilis NasE. (108 aa) |
| | yhgG | Orf, hypothetical protein; May function as a transcriptional regulator that controls feoABC expression. (78 aa) |
| | yhgI | Orf, hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. (191 aa) |
| | chuW | Putative oxygen independent coproporphyrinogen III oxidase; Residues 33 to 403 of 445 are 35.78 pct identical to residues 37 to 413 of 420 from GenPept 118 : gi|5106980|gb|AAD39908.1|AF119047_1 (AF119047) coproporphyrinogen oxidase homolog PhuW [Vibrio parahaemolyticus]. (445 aa) |
