STRINGSTRING
ycdS ycdS ytfM ytfM pldA pldA tolC tolC ompG ompG yncD yncD yddB yddB csgG csgG fiu fiu fepA fepA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ycdSPutative outer membrane protein; Exports the biofilm adhesin polysaccharide poly-beta-1,6-N- acetyl-D-glucosamine (PGA) across the outer membrane. The PGA transported seems to be partially N-deacetylated since N-deacetylation of PGA by PgaB is needed for PGA export through the PgaA porin (By similarity). (807 aa)
ytfMOrf, hypothetical protein; Part of the translocation and assembly module (TAM) autotransporter assembly complex, which functions in translocation of autotransporters across the outer membrane. Has anion selective channel-forming ability, but the physiological relevance of this activity is unclear; Belongs to the TamA family. (577 aa)
pldAOuter membrane phospholipase A; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities; Belongs to the phospholipase A1 family. (289 aa)
tolCOuter membrane channel; Residues 1 to 495 of 495 are 99.79 pct identical to residues 1 to 495 of 495 from Escherichia coli K-12 Strain MG1655: B3035. (495 aa)
ompGOuter membrane protein; Residues 1 to 301 of 301 are 98.67 pct identical to residues 1 to 301 of 301 from Escherichia coli K-12 Strain MG1655: B1319. (301 aa)
yncDPutative outer membrane receptor for iron transport; Residues 1 to 700 of 700 are 98.57 pct identical to residues 1 to 700 of 700 from Escherichia coli K-12 Strain MG1655: B1451. (700 aa)
yddBOrf, hypothetical protein; Residues 1 to 790 of 790 are 98.86 pct identical to residues 1 to 790 of 790 from Escherichia coli K-12 Strain MG1655: B1495. (790 aa)
csgGCurli production assembly/transport component, 2nd curli operon; May be involved in the biogenesis of curli organelles. (277 aa)
fiuPutative outer membrane receptor for iron transport; Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB. Can also transport catechol-substituted cephalosporins. Receptor for microcins M, H47 and E492 (By similarity). (760 aa)
fepAOuter membrane receptor for ferric enterobactin (enterochelin) and colicins B and D; Residues 1 to 746 of 746 are 99.19 pct identical to residues 1 to 746 of 746 from Escherichia coli K-12 Strain MG1655: B0584. (746 aa)
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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