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rpmF rpmF rpsR rpsR rplI rplI rpmB rpmB rpmE rpmE rplY rplY rpmG rpmG rplK rplK rplA rplA rplJ rplJ rplL rplL rpmJ rpmJ rplQ rplQ rplU rplU rpmA rpmA rpsT rpsT rpsU rpsU rplY-2 rplY-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpmFPfam: Ribosomal L32p protein family; TIGRFAM: rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)
rpsR30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (80 aa)
rplI50S ribosomal protein L9; Binds to the 23S rRNA. (147 aa)
rpmBTIGRFAM: L28: ribosomal protein L28; Pfam: Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family. (63 aa)
rpmE50S ribosomal protein L31; Binds the 23S rRNA. (72 aa)
rplY50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (178 aa)
rpmGPfam: Ribosomal protein L33; TIGRFAM: rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)
rplK50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa)
rplA50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa)
rplJ50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (166 aa)
rplL50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (122 aa)
rpmJTIGRFAM: rpmJ_bact: ribosomal protein L36; Pfam: Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
rplQTIGRFAM: L17: ribosomal protein L17; Pfam: Ribosomal protein L17. (113 aa)
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (104 aa)
rpmATIGRFAM: L27: ribosomal protein L27; PRINTS: Ribosomal protein L27 signature; Pfam: Ribosomal L27 protein; Belongs to the bacterial ribosomal protein bL27 family. (100 aa)
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)
rpsUTIGRFAM: S21p: ribosomal protein S21; PRINTS: Ribosomal protein S21 family signature; Pfam: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (58 aa)
rplY-2Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (189 aa)
Your Current Organism:
Clostridium sp. L74
NCBI taxonomy Id: 1560217
Other names: C. sp. L74
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