(19 nodes) Mixed, incl. Negative regulation by symbiont of host apoptotic process, and Flp/Fap pilin component network (Sphingomonas panacis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOH86432.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	AOH82903.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	AOH82904.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AOH82905.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (799 aa)
	AOH82906.1	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	AOH84590.1	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	AOH84835.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa)
	AOH84836.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)
	AOH86776.1	NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (140 aa)
	AOH84899.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AOH84900.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AOH84901.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (655 aa)
	AOH84945.1	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AOH84946.1	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AOH84947.1	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AOH84948.1	Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	AOH84949.1	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (536 aa)
	AOH84950.1	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AOH84951.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)

Your Current Organism:

Sphingomonas panacis

NCBI taxonomy Id: 1560345
Other names: JCM 30806, KCTC 42347, S. panacis, Sphingomonas panacis Singh et al. 2017, Sphingomonas sp. DCY99, strain DCY99

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOH82903.1	AOH82904.1	AWL63_01840	AWL63_01845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AOH82903.1	AOH82905.1	AWL63_01840	AWL63_01850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
AOH82903.1	AOH82906.1	AWL63_01840	AWL63_01855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
AOH82903.1	AOH84946.1	AWL63_01840	AWL63_14255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AOH82903.1	AOH84947.1	AWL63_01840	AWL63_14260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
AOH82903.1	AOH84950.1	AWL63_01840	AWL63_14275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
AOH82903.1	AOH86432.1	AWL63_01840	AWL63_01835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AOH82904.1	AOH82903.1	AWL63_01845	AWL63_01840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AOH82904.1	AOH82905.1	AWL63_01845	AWL63_01850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
AOH82904.1	AOH82906.1	AWL63_01845	AWL63_01855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AOH82905.1	AOH82903.1	AWL63_01850	AWL63_01840	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
AOH82905.1	AOH82904.1	AWL63_01850	AWL63_01845	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
AOH82905.1	AOH82906.1	AWL63_01850	AWL63_01855	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AOH82906.1	AOH82903.1	AWL63_01855	AWL63_01840	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
AOH82906.1	AOH82904.1	AWL63_01855	AWL63_01845	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AOH82906.1	AOH82905.1	AWL63_01855	AWL63_01850	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AOH82906.1	AOH84950.1	AWL63_01855	AWL63_14275	Flagellar FlaF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AOH84590.1	AOH84835.1	AWL63_12050	AWL63_13545	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AOH84590.1	AOH84899.1	AWL63_12050	AWL63_13960	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AOH84590.1	AOH84900.1	AWL63_12050	AWL63_13965	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613