12 items (Sphingomonas panacis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOH84590.1	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	AOH84835.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa)
	AOH84899.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AOH84900.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AOH84901.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (655 aa)
	AOH84945.1	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AOH84946.1	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AOH84947.1	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AOH84948.1	Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	AOH84949.1	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (536 aa)
	AOH84950.1	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AOH84951.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)

Your Current Organism:

Sphingomonas panacis

NCBI taxonomy Id: 1560345
Other names: JCM 30806, KCTC 42347, S. panacis, Sphingomonas panacis Singh et al. 2017, Sphingomonas sp. DCY99, strain DCY99

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOH84590.1	AOH84835.1	AWL63_12050	AWL63_13545	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AOH84590.1	AOH84899.1	AWL63_12050	AWL63_13960	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AOH84590.1	AOH84900.1	AWL63_12050	AWL63_13965	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
AOH84590.1	AOH84901.1	AWL63_12050	AWL63_13970	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.675
AOH84590.1	AOH84945.1	AWL63_12050	AWL63_14250	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AOH84590.1	AOH84946.1	AWL63_12050	AWL63_14255	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AOH84590.1	AOH84947.1	AWL63_12050	AWL63_14260	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AOH84590.1	AOH84949.1	AWL63_12050	AWL63_14270	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.881
AOH84590.1	AOH84950.1	AWL63_12050	AWL63_14275	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AOH84835.1	AOH84590.1	AWL63_13545	AWL63_12050	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AOH84835.1	AOH84899.1	AWL63_13545	AWL63_13960	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AOH84835.1	AOH84900.1	AWL63_13545	AWL63_13965	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
AOH84835.1	AOH84901.1	AWL63_13545	AWL63_13970	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.754
AOH84835.1	AOH84945.1	AWL63_13545	AWL63_14250	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AOH84835.1	AOH84946.1	AWL63_13545	AWL63_14255	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AOH84835.1	AOH84947.1	AWL63_13545	AWL63_14260	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
AOH84835.1	AOH84949.1	AWL63_13545	AWL63_14270	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.821
AOH84835.1	AOH84950.1	AWL63_13545	AWL63_14275	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AOH84835.1	AOH84951.1	AWL63_13545	AWL63_14280	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
AOH84899.1	AOH84590.1	AWL63_13960	AWL63_12050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404