(5 nodes) Type II secretion system (T2SS), protein F, and SAF domain network (Sphingomonas panacis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOH84945.1	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AOH84946.1	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AOH84947.1	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AOH84949.1	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (536 aa)
	AOH84950.1	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)

Your Current Organism:

Sphingomonas panacis

NCBI taxonomy Id: 1560345
Other names: JCM 30806, KCTC 42347, S. panacis, Sphingomonas panacis Singh et al. 2017, Sphingomonas sp. DCY99, strain DCY99

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOH84945.1	AOH84946.1	AWL63_14250	AWL63_14255	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AOH84945.1	AOH84947.1	AWL63_14250	AWL63_14260	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AOH84945.1	AOH84949.1	AWL63_14250	AWL63_14270	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.958
AOH84945.1	AOH84950.1	AWL63_14250	AWL63_14275	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AOH84946.1	AOH84945.1	AWL63_14255	AWL63_14250	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AOH84946.1	AOH84947.1	AWL63_14255	AWL63_14260	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOH84946.1	AOH84949.1	AWL63_14255	AWL63_14270	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.963
AOH84946.1	AOH84950.1	AWL63_14255	AWL63_14275	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AOH84947.1	AOH84945.1	AWL63_14260	AWL63_14250	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AOH84947.1	AOH84946.1	AWL63_14260	AWL63_14255	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOH84947.1	AOH84949.1	AWL63_14260	AWL63_14270	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.982
AOH84947.1	AOH84950.1	AWL63_14260	AWL63_14275	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOH84949.1	AOH84945.1	AWL63_14270	AWL63_14250	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AOH84949.1	AOH84946.1	AWL63_14270	AWL63_14255	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AOH84949.1	AOH84947.1	AWL63_14270	AWL63_14260	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AOH84949.1	AOH84950.1	AWL63_14270	AWL63_14275	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOH84950.1	AOH84945.1	AWL63_14275	AWL63_14250	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AOH84950.1	AOH84946.1	AWL63_14275	AWL63_14255	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AOH84950.1	AOH84947.1	AWL63_14275	AWL63_14260	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOH84950.1	AOH84949.1	AWL63_14275	AWL63_14270	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.992