(6 nodes) Mixed, incl. Pentose catabolic process, and Senescence marker protein-30 (SMP-30) network (Sphingomonas panacis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOH86406.1	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AOH82798.1	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AOH82799.1	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AOH86407.1	Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AOH83920.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	AOH86624.1	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)

Your Current Organism:

Sphingomonas panacis

NCBI taxonomy Id: 1560345
Other names: JCM 30806, KCTC 42347, S. panacis, Sphingomonas panacis Singh et al. 2017, Sphingomonas sp. DCY99, strain DCY99

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOH82798.1	AOH82799.1	AWL63_01175	AWL63_01180	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
AOH82798.1	AOH83920.1	AWL63_01175	AWL63_08025	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AOH82798.1	AOH86406.1	AWL63_01175	AWL63_01160	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AOH82798.1	AOH86407.1	AWL63_01175	AWL63_01185	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AOH82799.1	AOH82798.1	AWL63_01180	AWL63_01175	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
AOH82799.1	AOH83920.1	AWL63_01180	AWL63_08025	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AOH82799.1	AOH86406.1	AWL63_01180	AWL63_01160	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AOH82799.1	AOH86407.1	AWL63_01180	AWL63_01185	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AOH82799.1	AOH86624.1	AWL63_01180	AWL63_08030	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AOH83920.1	AOH82798.1	AWL63_08025	AWL63_01175	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AOH83920.1	AOH82799.1	AWL63_08025	AWL63_01180	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AOH83920.1	AOH86406.1	AWL63_08025	AWL63_01160	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
AOH83920.1	AOH86407.1	AWL63_08025	AWL63_01185	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
AOH83920.1	AOH86624.1	AWL63_08025	AWL63_08030	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AOH86406.1	AOH82798.1	AWL63_01160	AWL63_01175	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AOH86406.1	AOH82799.1	AWL63_01160	AWL63_01180	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AOH86406.1	AOH83920.1	AWL63_01160	AWL63_08025	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
AOH86406.1	AOH86407.1	AWL63_01160	AWL63_01185	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
AOH86406.1	AOH86624.1	AWL63_01160	AWL63_08030	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AOH86407.1	AOH82798.1	AWL63_01185	AWL63_01175	Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,5-dioxovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874