(6 nodes) Mixed, incl. AP endonuclease 2, and DnaB-like helicase N terminal domain network (Clostridium baratii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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gene fusions

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Others

textmining

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protein homology

Your Input:
	NPD11_598	Hypothetical protein. (225 aa)
	NPD11_599	Hypothetical protein. (116 aa)
	nfo	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (278 aa)
	NPD11_601	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. (293 aa)
	NPD11_602	Hypothetical protein; dnaB-like helicase N terminal domain protein; [L] COG0305 Replicative DNA helicase. (426 aa)
	NPD11_603	Conserved phage family protein. (251 aa)

Your Current Organism:

Clostridium baratii

NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NPD11_598	NPD11_599	NPD11_598	NPD11_599	Hypothetical protein.	Hypothetical protein.	0.773
NPD11_598	NPD11_601	NPD11_598	NPD11_601	Hypothetical protein.	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	0.401
NPD11_598	nfo	NPD11_598	NPD11_600	Hypothetical protein.	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.458
NPD11_599	NPD11_598	NPD11_599	NPD11_598	Hypothetical protein.	Hypothetical protein.	0.773
NPD11_599	NPD11_601	NPD11_599	NPD11_601	Hypothetical protein.	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	0.401
NPD11_599	nfo	NPD11_599	NPD11_600	Hypothetical protein.	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.458
NPD11_601	NPD11_598	NPD11_601	NPD11_598	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	Hypothetical protein.	0.401
NPD11_601	NPD11_599	NPD11_601	NPD11_599	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	Hypothetical protein.	0.401
NPD11_601	NPD11_602	NPD11_601	NPD11_602	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	Hypothetical protein; dnaB-like helicase N terminal domain protein; [L] COG0305 Replicative DNA helicase.	0.634
NPD11_601	NPD11_603	NPD11_601	NPD11_603	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	Conserved phage family protein.	0.657
NPD11_601	nfo	NPD11_601	NPD11_600	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.755
NPD11_602	NPD11_601	NPD11_602	NPD11_601	Hypothetical protein; dnaB-like helicase N terminal domain protein; [L] COG0305 Replicative DNA helicase.	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	0.634
NPD11_602	NPD11_603	NPD11_602	NPD11_603	Hypothetical protein; dnaB-like helicase N terminal domain protein; [L] COG0305 Replicative DNA helicase.	Conserved phage family protein.	0.746
NPD11_602	nfo	NPD11_602	NPD11_600	Hypothetical protein; dnaB-like helicase N terminal domain protein; [L] COG0305 Replicative DNA helicase.	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.556
NPD11_603	NPD11_601	NPD11_603	NPD11_601	Conserved phage family protein.	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	0.657
NPD11_603	NPD11_602	NPD11_603	NPD11_602	Conserved phage family protein.	Hypothetical protein; dnaB-like helicase N terminal domain protein; [L] COG0305 Replicative DNA helicase.	0.746
NPD11_603	nfo	NPD11_603	NPD11_600	Conserved phage family protein.	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.529
nfo	NPD11_598	NPD11_600	NPD11_598	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	Hypothetical protein.	0.458
nfo	NPD11_599	NPD11_600	NPD11_599	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	Hypothetical protein.	0.458
nfo	NPD11_601	NPD11_600	NPD11_601	Apurinic endonuclease family protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.	0.755

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