(7 nodes) Mixed, incl. Tryptophan halogenase, and ABC1 atypical kinase-like domain network (Streptomyces sp. CCMMD2014)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIV38773.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
	AIV37707.1	Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity. (298 aa)
	AIV37708.1	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)
	AIV37709.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	AIV37710.1	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (149 aa)
	AIV37711.1	Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
	AIV37712.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)

Your Current Organism:

Streptomyces sp. CCMMD2014

NCBI taxonomy Id: 1561022
Other names: S. sp. CCM_MD2014, Streptomyces sp. CCM_MD2014

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIV37707.1	AIV37708.1	NI25_32805	NI25_32810	Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AIV37707.1	AIV37709.1	NI25_32805	NI25_32815	Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AIV37707.1	AIV37710.1	NI25_32805	NI25_32820	Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.407
AIV37708.1	AIV37707.1	NI25_32810	NI25_32805	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.619
AIV37708.1	AIV37709.1	NI25_32810	NI25_32815	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AIV37708.1	AIV37710.1	NI25_32810	NI25_32820	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.481
AIV37709.1	AIV37707.1	NI25_32815	NI25_32805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.521
AIV37709.1	AIV37708.1	NI25_32815	NI25_32810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AIV37709.1	AIV37710.1	NI25_32815	NI25_32820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.716
AIV37709.1	AIV37711.1	NI25_32815	NI25_32825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AIV37710.1	AIV37707.1	NI25_32820	NI25_32805	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.407
AIV37710.1	AIV37708.1	NI25_32820	NI25_32810	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AIV37710.1	AIV37709.1	NI25_32820	NI25_32815	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AIV37710.1	AIV37711.1	NI25_32820	NI25_32825	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AIV37710.1	AIV37712.1	NI25_32820	NI25_32830	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AIV37711.1	AIV37709.1	NI25_32825	NI25_32815	Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AIV37711.1	AIV37710.1	NI25_32825	NI25_32820	Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.542
AIV37711.1	AIV37712.1	NI25_32825	NI25_32830	Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AIV37711.1	AIV38773.1	NI25_32825	NI25_18925	Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AIV37712.1	AIV37710.1	NI25_32830	NI25_32820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.444