(65 nodes) Mixed, incl. Phosphopantetheine, and Prodigiosin biosynthesis network (Streptomyces sp. CCMMD2014)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIV32280.1	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	AIV32353.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (407 aa)
	AIV32444.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	AIV32562.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (533 aa)
	AIV38489.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AIV32764.1	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa)
	AIV32765.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	AIV32766.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2169 aa)
	AIV32767.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (1051 aa)
	AIV32768.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3073 aa)
	AIV32770.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily. (246 aa)
	AIV32773.1	Peptide carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
	AIV32778.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
	AIV32779.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (629 aa)
	AIV32780.1	Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AIV38494.1	oleoyl-ACP hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AIV32781.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (422 aa)
	AIV32782.1	Thiazolinyl imide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	AIV32783.1	Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AIV32784.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1856 aa)
	AIV32785.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2230 aa)
	AIV32786.1	Enterobactin synthase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
	AIV32825.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (407 aa)
	AIV32969.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AIV32973.1	4'-phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily. (226 aa)
	AIV32974.1	Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AIV33452.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	AIV33456.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (740 aa)
	AIV33457.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3619 aa)
	AIV33458.1	oleoyl-ACP hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AIV38599.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glycosyltransferase family. (418 aa)
	AIV33738.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AIV33739.1	Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	AIV33740.1	Phosphoenolpyruvate-utilizing enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (946 aa)
	AIV33741.1	SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	AIV33742.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AIV33743.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AIV33744.1	Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2307 aa)
	AIV33745.1	Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (532 aa)
	AIV33746.1	8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (637 aa)
	AIV33747.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	AIV33749.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
	AIV33751.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	AIV33752.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AIV33753.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily. (265 aa)
	AIV33754.1	RedV protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	AIV33756.1	RedY protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	AIV33757.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AIV33758.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (1024 aa)
	AIV33759.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AIV38643.1	AMP-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AIV33989.1	Haloalkane dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AIV33991.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	AIV34906.1	Acyltransferase papA2; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	AIV35137.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (422 aa)
	AIV35332.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (108 aa)
	AIV36235.1	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AIV36289.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AIV36608.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	AIV36857.1	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	AIV36959.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	AIV37130.1	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AIV37704.1	Ketoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	AIV39032.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AIV38322.1	Ferredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)

Your Current Organism:

Streptomyces sp. CCMMD2014

NCBI taxonomy Id: 1561022
Other names: S. sp. CCM_MD2014, Streptomyces sp. CCM_MD2014

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIV32280.1	AIV32764.1	NI25_01065	NI25_03830	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic synthesis protein MbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AIV32280.1	AIV32765.1	NI25_01065	NI25_03835	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AIV32280.1	AIV32766.1	NI25_01065	NI25_03840	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AIV32280.1	AIV32767.1	NI25_01065	NI25_03845	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.987
AIV32280.1	AIV32768.1	NI25_01065	NI25_03855	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIV32280.1	AIV32770.1	NI25_01065	NI25_03865	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	0.486
AIV32280.1	AIV32773.1	NI25_01065	NI25_03895	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AIV32280.1	AIV32784.1	NI25_01065	NI25_03970	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIV32280.1	AIV32785.1	NI25_01065	NI25_03975	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AIV32280.1	AIV32786.1	NI25_01065	NI25_03980	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Enterobactin synthase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AIV32280.1	AIV32973.1	NI25_01065	NI25_05015	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	4'-phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	0.412
AIV32280.1	AIV33456.1	NI25_01065	NI25_08085	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AIV32280.1	AIV33457.1	NI25_01065	NI25_08095	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AIV32280.1	AIV33458.1	NI25_01065	NI25_08105	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	oleoyl-ACP hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AIV32280.1	AIV33742.1	NI25_01065	NI25_09760	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AIV32280.1	AIV33744.1	NI25_01065	NI25_09770	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
AIV32280.1	AIV33745.1	NI25_01065	NI25_09775	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.548
AIV32280.1	AIV33753.1	NI25_01065	NI25_09815	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	0.660
AIV32280.1	AIV34906.1	NI25_01065	NI25_16465	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase papA2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AIV32280.1	AIV35332.1	NI25_01065	NI25_19015	Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.597