(11 nodes) Mixed, incl. Cobalamin binding, and Cell wall modification network (Streptomyces sp. CCMMD2014)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cpdA	Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. (251 aa)
	AIV34150.1	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
	AIV34162.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AIV34164.1	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	AIV34517.1	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AIV34519.1	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	AIV34520.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	AIV34521.1	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. (207 aa)
	AIV34575.1	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	AIV34632.1	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	AIV36631.1	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)

Your Current Organism:

Streptomyces sp. CCMMD2014

NCBI taxonomy Id: 1561022
Other names: S. sp. CCM_MD2014, Streptomyces sp. CCM_MD2014

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIV34150.1	AIV34162.1	NI25_12170	NI25_12235	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AIV34150.1	AIV34164.1	NI25_12170	NI25_12245	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AIV34150.1	AIV34519.1	NI25_12170	NI25_14280	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AIV34150.1	AIV34575.1	NI25_12170	NI25_14605	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AIV34150.1	AIV34632.1	NI25_12170	NI25_14925	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AIV34150.1	AIV36631.1	NI25_12170	NI25_26805	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AIV34162.1	AIV34150.1	NI25_12235	NI25_12170	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AIV34162.1	AIV34164.1	NI25_12235	NI25_12245	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AIV34162.1	AIV34519.1	NI25_12235	NI25_14280	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AIV34162.1	AIV34575.1	NI25_12235	NI25_14605	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AIV34162.1	AIV34632.1	NI25_12235	NI25_14925	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AIV34164.1	AIV34150.1	NI25_12245	NI25_12170	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AIV34164.1	AIV34162.1	NI25_12245	NI25_12235	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AIV34164.1	AIV34519.1	NI25_12245	NI25_14280	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AIV34164.1	AIV34520.1	NI25_12245	NI25_14285	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AIV34164.1	AIV34575.1	NI25_12245	NI25_14605	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AIV34164.1	AIV34632.1	NI25_12245	NI25_14925	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIV34164.1	AIV36631.1	NI25_12245	NI25_26805	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AIV34517.1	AIV34519.1	NI25_14270	NI25_14280	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AIV34517.1	AIV34520.1	NI25_14270	NI25_14285	Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664