(8 nodes) Mixed, incl. Carotenoid biosynthetic process, and Lipid droplet network (Streptomyces sp. CCMMD2014)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIV32894.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	AIV32897.1	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AIV32898.1	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AIV32899.1	Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (680 aa)
	AIV32900.1	Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (354 aa)
	AIV32901.1	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	AIV32902.1	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AIV32903.1	Squalene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)

Your Current Organism:

Streptomyces sp. CCMMD2014

NCBI taxonomy Id: 1561022
Other names: S. sp. CCM_MD2014, Streptomyces sp. CCM_MD2014

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIV32894.1	AIV32897.1	NI25_04595	NI25_04610	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AIV32894.1	AIV32898.1	NI25_04595	NI25_04615	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AIV32894.1	AIV32899.1	NI25_04595	NI25_04620	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
AIV32894.1	AIV32900.1	NI25_04595	NI25_04625	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.	0.775
AIV32894.1	AIV32901.1	NI25_04595	NI25_04630	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
AIV32894.1	AIV32902.1	NI25_04595	NI25_04635	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AIV32894.1	AIV32903.1	NI25_04595	NI25_04640	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AIV32897.1	AIV32894.1	NI25_04610	NI25_04595	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AIV32897.1	AIV32898.1	NI25_04610	NI25_04615	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIV32897.1	AIV32899.1	NI25_04610	NI25_04620	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AIV32897.1	AIV32900.1	NI25_04610	NI25_04625	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.	0.819
AIV32897.1	AIV32901.1	NI25_04610	NI25_04630	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AIV32897.1	AIV32902.1	NI25_04610	NI25_04635	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AIV32897.1	AIV32903.1	NI25_04610	NI25_04640	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
AIV32898.1	AIV32894.1	NI25_04615	NI25_04595	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AIV32898.1	AIV32897.1	NI25_04615	NI25_04610	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AIV32898.1	AIV32899.1	NI25_04615	NI25_04620	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AIV32898.1	AIV32900.1	NI25_04615	NI25_04625	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.	0.873
AIV32898.1	AIV32901.1	NI25_04615	NI25_04630	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AIV32898.1	AIV32902.1	NI25_04615	NI25_04635	1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827